Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_023563.1 Length=68262 Score E Sequences producing significant alignments: (Bits) Value seq539 125 3e-24 >seq539 Length=1209 Score = 125 bits (138), Expect = 3e-24 Identities = 300/441 (68%), Gaps = 21/441 (5%) Strand=Plus/Minus Query 8189 ATGGACCCCGACACGGGCCGGATATTCGGACACATCGCGTGCTTTGGTGCGTGCCACCGG 8248 || ||| |||| |||||| || ||||||| |||| ||||| || || ||||| | Sbjct 1036 ATCGACTCCGA---GGGCCGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCATGTG 980 Query 8249 TCGGTGCAGA-ACGCGTGCGTCATGGCCCCGAAATCGCCGTCGAACTACGCGCAGTTCCA 8307 ||| || || |||||| ||| || | || | | | |||||| || ||||| Sbjct 979 G-GGTTCACCGACCAGTGCGTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCA 921 Query 8308 CACCTCGCCGCCTGTGCTGCTCGATGACGGCACCCGACTCGCCGTGGGCCGCCTGACCGT 8367 |||| | || || ||| ||||||| |||| ||| ||| |||| ||| | || ||||| Sbjct 920 CACCGCCCCACCGGTGATGCTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGT 861 Query 8368 CGGCACCGGGCATGCC--GACGAGCGGCTGCGTCCCGGCCCGGCCATGGCGCACTACGAC 8425 ||||||||||||||| | ||| | | || || | | ||| || ||||||||| Sbjct 860 GGGCACCGGGCATGCCGGGTCGAAAGCCCCCGCCCATG--CTGCCGCAGCCCACTACGAC 803 Query 8426 AACACCGGCGCGTGCTGGGCGCTGGTGCGTGCCTACG-AGACCAGCGTCGGAATCGAGGT 8484 ||||||||| | |||| || || || || ||| || |||| | | ||| ||| ||| Sbjct 802 AACACCGGCACCTGCTTCGCCCTCGTCCGCGCCGGCGAAGACGAAC-ACGGCATCTGGGT 744 Query 8485 GTCGGGCGTGGCTGCCCCGTGGGCCAC---CCCCGAGCAGATCGAGATGGGCCTCGCCTC 8541 |||||||||||| || || ||| ||| | ||| | || || ||||| | Sbjct 743 GTCGGGCGTGGCCGCACC-TGG--CACTGACAGCGAAACCCTGCAGGCCGGGCTCGCGGC 687 Query 8542 GCCGCTGTCCGGCGATTGGCGGGATTTCG--GGCAGGGCCTCGACCTGATCGCCGCCTTG 8599 || ||||||| ||||||||| | ||| |||| | | || || |||||||| | Sbjct 686 ACCCTTGTCCGGGGATTGGCGGCAGATCGGCGGCA--ACTTGGAGCTCGTCGCCGCCCTC 629 Query 8600 AGCGTCAACACGCCCGGTTTC 8620 || ||||| || |||||| Sbjct 628 GCGGTGAACACACCGGGTTTC 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 217769444892348