Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq106697 150 1e-30 seq56668 134 1e-25 seq201472 89.7 4e-12 >seq106697 Length=3139 Score = 150 bits (166), Expect = 1e-30 Identities = 670/1040 (64%), Gaps = 27/1040 (3%) Strand=Plus/Plus Query 281438 AGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCA 281497 || || || |||||||||| || || || || | ||| || || || ||||| | || Sbjct 911 AGGATGCCGTTGGCATCCAGGTCGAAGGTCACCTGAATCTGGGGCACTCCTCTTGGTGCC 970 Query 281498 GGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGT 281557 |||||||| || || | || || ||||| | || || || || | ||| Sbjct 971 GGTGGGATGCCCATCAGGTCGAAAGTGCCCAGGAGGTGGTTGTCCTTGGTCATGGCGCGT 1030 Query 281558 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 281617 ||||| ||||| | || || || || ||| || || || | || || || ||| Sbjct 1031 TCACCTTCGAACACCTGAATGGTGACGGCAGGCTGGTTGTCCGCGTACGTCGTGAATGTC 1090 Query 281618 CTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCA 281677 ||||| | || ||||| || |||| | || | || || | ||| | |||||| Sbjct 1091 TTGGATGTCTTGCAAGGTATGCGGCTGTTACGCTCTACGATCTTCGCCATTACACCACCT 1150 Query 281678 GCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATAT-TTTGAAGTTT 281736 || ||||| | || || |||||||| | || || || || | | | ||||| | Sbjct 1151 GCGGTTTCGATTCCCAGTGAAAGAGGGGCAACGTCGACGAGCAACACGTCTTTGATAATA 1210 Query 281737 TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 281796 | || || | || ||||||||||||||||| || || || || ||||||||||| Sbjct 1211 TCGCTC-GTGTCTCCTGTTAGAATAGCTGCTTGAATCGCTGCTCCGTAAGCAACAGCTTC 1269 Query 281797 ATCAGGATTAACAGTTTCAT--TTAGTTTTTTACCATTGAAAAAAT--TTGAAAGAAGTT 281852 ||| ||||| | | ||| ||| | ||||||||||| || | ||| || || | Sbjct 1270 ATCGGGATTGATGG--ACATGGCTAGGTCCTTACCATTGAAGAAGTCCTTG--AGTAGCT 1325 Query 281853 GTCTTACCT-TAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGAT 281911 ||| | | | || || || | ||||| || || | || || ||||| | || || Sbjct 1326 -TCTGAATTCTTGGGATGCGCGTAGATCCACCCACCAGCACGATCTCATGTATTTGGGAC 1384 Query 281912 TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCT-CTAAACAA 281970 || | || ||||| ||| || |||| || || ||||| | | ||| | || | Sbjct 1385 TTTCCGAGCTTTGAGTCCTGTAGCGCTTTCTCTACAGGTTCCA-AGGTGCTGCGGAATAG 1443 Query 281971 GTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATTCCTT 282029 ||| ||| | ||||||||| | ||||| || | || | || || |||||||| | Sbjct 1444 GTCCATACACATTTCTTCGAACCTGGCTCTTGTGATTTTG-CTGTAGAAGTCAATTCCAT 1502 Query 282030 CGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCAC 282089 | || | || || | ||| || | | || || || |||| || || |||| Sbjct 1503 CAAAGAGAGCGTCGATTTCGATGCTCGCTTCTGTGCTGCTCGAGAGTGTTCGCTTTGCAC 1562 Query 282090 GTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG-ATTCAAATCTGTTTTA 282148 |||| || || || || || | || | |||| | | || ||| |||| || || Sbjct 1563 GTTCGCAGGCAGTTCTAAGGCGTCTGATGGCTCTCG-TGTTTGTTTTCAGGTCACGCTTG 1621 Query 282149 TATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCT 282208 | || || |||| ||||| || | | | || || || ||||| || ||||| || Sbjct 1622 TGCTTCCTTGTGAACTCTTCGACGAAGTAGTTCACCAGCCGGTTATCGAAGTCTTCCCCC 1681 Query 282209 CCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGT---CCATCTTCAAGAGAC 282265 || | | || | ||||| || | | || | ||| | | || || |||| || Sbjct 1682 CCGAGATGCGTGTCTCCTGCTGTGGAGCGAACCTCGAACATTGAACCTTCGTCAATAGTG 1741 Query 282266 AAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTG 282325 | || | ||||| || || ||||||| || || || || || || |||| | | Sbjct 1742 AGAATGGACACATCGAAAGTGCCTCCACCCAGGTCGAATATTAGCACGTT--TTTC-TCG 1798 Query 282326 TCTT---GGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATT 282382 ||| |||| || || | || ||||||| ||| || || || || ||||| || || Sbjct 1799 CCTTTCAGGTTCTTGTCCAAGCCGTACGCAAGAGCGGCTGCGGTGGGCTCATTGATGATG 1858 Query 282383 CTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCG 282442 | | || || || || |||||| ||| || ||||| |||||||||| || || ||| Sbjct 1859 CGAAGTACGTTGAGGCCCGCAATTGCTCCGGCGTCTTTCGTGGCTTGTCGCTGAGAGTCG 1918 Query 282443 TTAAAATATGCAGGAACAGT 282462 || || || ||||| || || Sbjct 1919 TTGAAGTAAGCAGGCACCGT 1938 >seq56668 Length=3325 Score = 134 bits (148), Expect = 1e-25 Identities = 132/170 (78%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 282320 TCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATA 282379 ||||| ||||| |||||| | |||||| |||| ||||||||||||||||| |||||| Sbjct 3145 TCTTTATCTTG---TTTATCTAAACCATAAGCAATGGCAGCAGCAGTTGGTTCGTTAATA 3089 Query 282380 ATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAA 282439 ||||| || || | || ||||| ||||||||| |||||| |||| | |||| | Sbjct 3088 ATTCTTTCTACTTTTAATCCCGCAATAATTCCTGCATTTTTAGTAGCTTCACGTTGTTCA 3029 Query 282440 TCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCC 282489 | |||||| || ||||||||||||||||| || | || || || ||| || Sbjct 3028 TTGTTAAAGTAAGCAGGAACAGTAATAACTGCTTTTGATATTTTTTTACC 2979 >seq201472 Length=3412 Score = 89.7 bits (98), Expect = 4e-12 Identities = 140/200 (70%), Gaps = 3/200 (2%) Strand=Plus/Minus Query 282283 GGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAG 282342 |||||| || || | ||| || | ||| | ||| | ||| |||| | || || || Sbjct 2287 GGTTCCTCCTCCAAGATCGAAGACAAGAATGTTCTTCTCTCCCTCTT---TCTTGTCCAG 2231 Query 282343 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 282402 ||| || || | |||||||| || ||||| || || || | || ||||| |||||||| Sbjct 2230 ACCGTAGGCGATGGCAGCAGCTGTGGGTTCGTTGATGATACGCATCACATTGAGACCAGC 2171 Query 282403 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 282462 ||| |||| ||||| || |||||||| | || | ||||| || || || || || || Sbjct 2170 AATGGTTCCGGCATCCTTGGTGGCTTGACGCTGGGCGTCGTTGAAGTAGGCTGGCACGGT 2111 Query 282463 AATAACGGCATCTGTTACTT 282482 | ||||| | || |||| Sbjct 2110 CACGACGGCGTGGGTCACTT 2091 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3730589528684616