Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_023686.1 Length=67949 Score E Sequences producing significant alignments: (Bits) Value seq133315 264 5e-66 seq539 176 2e-39 seq70437 131 7e-26 >seq133315 Length=1321 Score = 264 bits (292), Expect = 5e-66 Identities = 526/769 (68%), Gaps = 20/769 (3%) Strand=Plus/Minus Query 16400 CGTGCCACCAAGGTCAACTCTTGCGGGCTGCCGATCAGCGGTCCCGCCAACCGGATCGTG 16459 || ||||||||||||||| ||||||||| || || || ||| |||| ||| || Sbjct 987 CGCGCCACCAAGGTCAACAGTTGCGGGCTCCCCGTCGAGGGCGCCGGCAACT--ATC-TG 931 Query 16460 ACT---GACGGCTTCGTCACCTTCAACATCGACCCGGTGCTCAAGGACGCGGAGGAGCTG 16516 || ||||| ||||| | ||||| || ||| | ||||||||| | ||| | Sbjct 930 ACCACCGACGGTTTCGTGTCGTTCAAAATGTCCCCCAACATGAAGGACGCGAACGAGATC 871 Query 16517 TCGCAGACCAACGCGGCCGGTAAGGAATGCGTCACCGACCGCACTCCGCCGGAGCGGAAG 16576 |||| |||||| || ||| ||| ||||||||||||| ||||| ||||| ||| Sbjct 870 GAGCAGGAGAACGCGCAGGGACAGGTGTGCATCACCGACCGCACCCCGCCCGAGCGCAAG 811 Query 16577 TGGTACAACATCCAGGCCGAACTCTGCGGTGTCAACACCGGCCTGATCACCCTGCTCAAC 16636 |||||| || || || | || ||||| || ||| ||| ||||||||| |||||||| Sbjct 810 TGGTACGACCTCGAGCTGGCCCTGTGCGGGGTGAACTCCGAGCTGATCACCATGCTCAAC 751 Query 16637 GGGTGGCCGCAGATCCTCGACTACGACGACAACCCGATCGGTTTCCGCGACCAGAAGGAA 16696 | |||| |||| |||||||| | | | || || |||| ||||||||||||||| Sbjct 750 GCGTGGAAGCAGGAAGTCGACTACAAGGGCGACTCGGTCGGCTTCCGCGACCAGAAGCGC 691 Query 16697 GTGGACGACCAGTTCGGCGTCGCCTTCGAGGTCTGGACCGGCGGCAAGTCGGACGACGAC 16756 || || | | ||| || ||| | || ||||||||||||||||| | |||||||| Sbjct 690 GTCGAATCGGACTACGGTGTGGCCCTGGAAATCTGGACCGGCGGCAAGGCCGACGACGAT 631 Query 16757 TGCCCGACCCCGACCTCGGACTCGATCTTCTCGGCTC--CGTCGTCCGGCCTCCAGTACG 16814 ||||| ||||| || ||| |||| || ||| | | |||||||| |||| | Sbjct 630 TGCCCCACCCCCAC--CGGCGACGATATTTTCGCCACGAGCACGTCCGGCAAAAAGTATG 573 Query 16815 GCTACTTCCTGATCGCGGGCAAGGAGTTCACGCTCGGCGCGATCAATATCGGCGCGCAGG 16874 | ||| | |||| ||||| |||||||||||||||| || | | ||| | | Sbjct 572 GGTACCTGCTGACGTGGGGCACCGAGTTCACGCTCGGCGACATTGAGGTACAGGCGGACG 513 Query 16875 TGTCGACGTTCACGCTGTCCGGAATCTCGATCGCCATCCCGCATTGGGGACGGGGTCCGT 16934 | | | ||||| || || || ||| ||||| |||||| ||||| || || |||| Sbjct 512 TCGCCAACTTCACCCTCTCGGGCATCAGCATCGCTGGCCCGCAGTGGGGTCGTGGCCCGT 453 Query 16935 ACAACGTCGCCGCCACCGACGCGTCCGGCACTCCCGGCCGTCTGCTGGAGCCGATGGACG 16994 || || | ||||| ||| | | ||| | ||||||||| | || ||| | Sbjct 452 GGAATGTTGTCGCCATCGATGACGACAACACGGCTGGCCGTCTGATCACTCCTCCGGATG 393 Query 16995 AGGACTCTCACTTCGCGGTGTTCCGTACGCCGGTCGCGCCGCCCGAGGTCACCAACGGCG 17054 | ||| || ||| || || || ||| |||||||||| || ||| || || | Sbjct 392 ATGACCAGCATTTCATTCTGCAGCGCACCCCGATCGCGCCGCCGGA-GTCGACACCGTCC 334 Query 17055 GCGAGCCTCTGC-CGCTGGACATCCTCGGGAAGTTCGTCGCGCCGAACTACTACTTCGGC 17113 || |||| |||||||||| ||| | |||| | ||| ||| ||||||||| Sbjct 333 GC------CTGCGAGCTGGACATCACCGGCACGTTCCAGGATCCGGACTTCTACTTCGGT 280 Query 17114 GGATCCGGCGG-CGAACCGGCTGCGGACGTGGCACCGGACCAGGACGAG 17161 || |||| || | ||||||||| || ||||| ||||| ||| |||| Sbjct 279 GG-GCCGGAGGATGCACCGGCTGCTGATGTGGCGCCGGATCAGCCCGAG 232 >seq539 Length=1209 Score = 176 bits (194), Expect = 2e-39 Identities = 329/477 (69%), Gaps = 11/477 (2%) Strand=Plus/Minus Query 9881 TGTTCTCGGATCCCAAGCTGACCGAGCCGACGCGTTCCACCATGGATCCCGAGACCGGAC 9940 ||||| |||||| ||| |||| ||||| | |||| || ||||| || | Sbjct 1077 TGTTCGAGGATCCTGGGCTCACCGCACCGACCCCGCTATCCATCGACTCCGAG---GGCC 1021 Query 9941 GGATCTTCGGACACATCGCGTGCTTCGGCACGTGCCACCGGTCGATCCAGGCTCAGTGCC 10000 | ||| ||||||| |||| |||||||| | ||||| | | || | |||||| Sbjct 1020 GCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCATGTGGGGTTCACCGACCAGTGCG 961 Query 10001 TCATGGCCCCTAAGTCGCCGACGAACTACTCGCAGTTCCTCACGTCGCCGCCGGTCCTGC 10060 | ||| || | || | ||| |||| | || |||| ||| | || ||||| ||| Sbjct 960 TTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCACACCGCCCCACCGGTGATGC 901 Query 10061 TCGACAATGGCGAACGGATCCCCGTCGGACGCCTCACCGTCGGCACCGGGCACGCTCC-- 10118 ||||||| || || || |||||||||| | |||||||| ||||||||||| || Sbjct 900 TCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCATGCCGGGT 841 Query 10119 CGAGAACCTGTCCGGCGGTCCGGCCGTCGCGCACTACGACAACACCGGCACGTGCTTCGC 10178 ||| | || ||| | | | |||| || |||||||||||||||||||| |||||||| Sbjct 840 CGAAAGCCC--CCGCCCATGCTGCCGCAGCCCACTACGACAACACCGGCACCTGCTTCGC 783 Query 10179 GCTCGTCAACGTCGGCGAGGACGAGCACGGGATCTGGTTCTCCGGCGTCGCGGCACCGTG 10238 |||||| || |||||| ||||| ||||| |||||| | || ||||| || ||||| || Sbjct 782 CCTCGTCCGCGCCGGCGAAGACGAACACGGCATCTGGGTGTCGGGCGTGGCCGCACC-TG 724 Query 10239 GGCC--ACGCCGGAGCAGATCGAGATGGGCCTCTCCGCGCCCCTGTCGGGCGACTGGCGG 10296 | | || || | | | || || ||| | || ||| |||| || || |||||| Sbjct 723 GCACTGACAGCGAAAC-CCTGCAGGCCGGGCTCGCGGCACCCTTGTCCGGGGATTGGCGG 665 Query 10297 GACTTCGGTCACGGCCTCGACCTGGTGGCGGCGCTCGCCGTGAACACTCCCGGTTTC 10353 | |||| | | | || || || || || ||||| |||||||| || |||||| Sbjct 664 CAGATCGGCGGCAACTTGGAGCTCGTCGCCGCCCTCGCGGTGAACACACCGGGTTTC 608 >seq70437 Length=1356 Score = 131 bits (144), Expect = 7e-26 Identities = 189/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 9336 CCGGACGTTCACGAACGCCACGCTCGCGATCCTCGGTAAGCCGACCAGCGACGGCCGGAT 9395 |||||||||||| ||||||| |||| | ||||| | | ||| |||||| || || Sbjct 456 CCGGACGTTCACCGACGCCACCGTCGCACTACTCGGCACCTCCACCGACGACGGGCGCAT 397 Query 9396 GCTCGACAAGGACATCAAGCTCTCGTTCCGCGAGTTCCCGCTGCCGGTCATGTGGTGCAG 9455 ||||| ||||||| | || | |||||| ||||| |||||| | |||||| | Sbjct 396 GCTCGCATCGGACATCGACGTCACCTTCCGCAGCTTCCCCCTGCCGCTGATGTGGGTGAA 337 Query 9456 GCAGACGACCGGCGGGCACACCGACGCGTACACCGTCGGCGTGCTGGAATCCGCCGAGGT 9515 |||||| | ||| ||| | |||| ||||| |||||||| | ||| |||| || Sbjct 336 GCAGACCGGCTTCGGACACGACAACGCCTACACGGTCGGCGTCATCGAAGCCGCACGTGT 277 Query 9516 CAAGGGCAACAAGGTCATAGGGTCCGGCTACCTGCTCAACACCGCCGAGGCCGACGAGGC 9575 | | ||| || || | | |||||| || ||||||||||| | |||||| ||||||| Sbjct 276 CGACGGCGACGCCATCCTCGCGTCCGGTTATCTGCTCAACACGGACGAGGCGAACGAGGC 217 Query 9576 GGCAGAGCAGCTTGCTCATGGCGTCAC 9602 || || ||| | | || |||||||| Sbjct 216 TGCCGACCAGATCGAGCACGGCGTCAC 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 216770341419160