Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_023711.1 Length=68720 Score E Sequences producing significant alignments: (Bits) Value seq539 114 6e-21 >seq539 Length=1209 Score = 114 bits (126), Expect = 6e-21 Identities = 289/427 (68%), Gaps = 18/427 (4%) Strand=Plus/Minus Query 8201 GGGCCGGATATTTGGACACATCGCGTGCTTTGGTGCGTGCCACCGATCGGTGCAGA-ACG 8259 |||||| || |||||| |||| ||||| || || ||||| | ||| || || Sbjct 1025 GGGCCGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCAT-GTGGGGTTCACCGACC 967 Query 8260 CGTGCGTCATGGCCCCGAAATCGCCGTCGAACTACGCACAGTTCCACACTTCGCCGCCGG 8319 |||||| ||| || | || | | | |||||| || |||||||| | || |||| Sbjct 966 AGTGCGTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCACACCGCCCCACCGG 907 Query 8320 TGCTGCTCGATGACGGCACCCGCCTCGCCGTGGGCCGCCTGACCGTCGGCACCGGGCACG 8379 || ||||||| |||| ||| ||| |||| ||| | || ||||| ||||||||||| | Sbjct 906 TGATGCTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCATG 847 Query 8380 C--AGACGAGCGGCTGCGTCCCGGCCCGGCCATGGCGCACTACGACAACACCGGCGCGTG 8437 | | ||| | | || || | | ||| || |||||||||||||||||| | || Sbjct 846 CCGGGTCGAAAGCCCCCGCCCATG--CTGCCGCAGCCCACTACGACAACACCGGCACCTG 789 Query 8438 CTGGGCGCTGGTGCGTGCCTACG-AGACCAGCGTCGGAATCGAGGTGTCGGGCGTGGCCG 8496 || || || || || ||| || |||| | | ||| ||| ||||||||||||||||| Sbjct 788 CTTCGCCCTCGTCCGCGCCGGCGAAGACGAAC-ACGGCATCTGGGTGTCGGGCGTGGCCG 730 Query 8497 CCCCGTGGGCCAC---CCCCGAGCAGATCGAGATGGGCCTCGCCTCGCCGCTGTCCGGCG 8553 | || ||| ||| | ||| | || || ||||| | || ||||||| | Sbjct 729 CACC-TGG--CACTGACAGCGAAACCCTGCAGGCCGGGCTCGCGGCACCCTTGTCCGGGG 673 Query 8554 ATTGGCGTGATTTCG--GGCAGGGCCTCGATCTGATCGCCGCCCTGAGCGTCAACACGCC 8611 ||||||| | ||| |||| | | || || |||||||||| || ||||| || Sbjct 672 ATTGGCGGCAGATCGGCGGCA--ACTTGGAGCTCGTCGCCGCCCTCGCGGTGAACACACC 615 Query 8612 CGGTTTC 8618 |||||| Sbjct 614 GGGTTTC 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 219231391827556