Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_023719.1 Length=497513 Score E Sequences producing significant alignments: (Bits) Value seq182204 313 8e-80 seq202020 289 9e-73 seq17329 136 1e-26 seq115160 109 2e-18 >seq182204 Length=8499 Score = 313 bits (346), Expect = 8e-80 Identities = 548/790 (69%), Gaps = 37/790 (5%) Strand=Plus/Plus Query 69268 TATTTCTATGTAATGCATAGATTTGAACCCGAGACTAGACTTGATTTTATTAAAGATATG 69327 || || ||||||||||| | ||| | ||| | | || | ||||||||| ||||| Sbjct 2223 TACTTTTATGTAATGCACCGTTTTAATATCGA---TCAAATTAAATTTATTAAAAATATG 2279 Query 69328 CAAACTCGCAACTTATATGCTTCTATTAGTGTTGGTGTAAAAGAAGAAGAGTATCAATTT 69387 || | || ||||||||||| ||||| ||||||| ||| |||| || | | || Sbjct 2280 CATGAACAAAAATTATATGCTTCAATTAGCATTGGTGTTAAAAAAGAGGATAAAGAGTTA 2339 Query 69388 ATTAATCAATTAGCTGATGAAA----AACTTGTTCCAGAATATATCACTATTGATATAGC 69443 || | |||||| || ||| | || |||| |||| ||| ||||||||||| || Sbjct 2340 CTTGAACAATTA----ATCAAACTGAATCTAATTCCTGAATTTATTACTATTGATATTGC 2395 Query 69444 TCACGGACATTCTAATGCTGTTATTAAAATGATTCAACATATAAAGAAGATGTT------ 69497 ||| || ||| ||||||| | |||||||| || |||||| | | || Sbjct 2396 TCATGGTCATAGTAATGCTATGGAAGAAATGATTAAATTTATAAAAACCACTTTTGCTAA 2455 Query 69498 ACCAAATAGT------TTTGTTATTGCTGGTAATGTTGGTACACCTGAAGCTGTTCGTGA 69551 | |||||| | ||| ||||||||||||| ||| ||| |||||| || Sbjct 2456 AACAAATACTAAACCTTTTATTATTGCTGGTAACGTTATGACAAAAACCGCTGTTAAAGA 2515 Query 69552 ACTTGAAAATGCAGGCGCAGATGCTACAAAAGTTGGTATTGGCCCAGGTAAAGTATGTAT 69611 | ||||| |||||| ||||| | ||| ||||| |||| ||||| |||| ||||| Sbjct 2516 TTTAGAAAAATGAGGCGCTGATGCAATTAAATTTGGTGTTGGTCCAGGAAAAGCTTGTAT 2575 Query 69612 TACTAAAATCAAAACTGGTTTTGGTACTGGCGGCTGGCAGTTAGCTGCATTGCGTTGGTG 69671 ||||||| | |||||||| |||||||| || || || || ||| ||| || | | || Sbjct 2576 TACTAAACTAAAAACTGGATTTGGTACAGGTGGTTGACAATTAAATGCTTTACAA-GATG 2634 Query 69672 TT--CAAAAGTAGCTACTAAACCAATAATTGCTGATGGTGGTATTCGTACTAACGGTGAT 69729 || ||| || | | ||||||||| ||||||| |||||||||||| | ||| |||||| Sbjct 2635 TTGCCAATAGCACC-ACTAAACCATTAATTGCAGATGGTGGTATTAGATGTAATGGTGAT 2693 Query 69730 ATTGCTAAATCTGTACGTTTTGGCGCTTCAATGGTTATGATTGGTTCGCTATTTGCGGGT 69789 ||||||||| | || |||||| || | ||| ||||| || | || |||||| Sbjct 2694 ATTGCTAAAGCAATAGCTTTTGGTGCCACTATGATTATGGCAGGAAGTATTTTAGCGGGT 2753 Query 69790 CACGAGGAATCACCAGGTGAGACGATAGaaaaaaaTGGTAAATTATATAAAGAGTATTTT 69849 | || |||||||| || | | | || ||||||| ||| || ||||| |||||| Sbjct 2754 TATGATGAATCACCTGGCAAAATTGTTACAATAAATGGTCAATCTTACAAAGAATATTTT 2813 Query 69850 GGATCCGCTTCTGAATATCAAAAGGGTGAAAAGAAGAACGTTGAAGGAAAGAAGATACAT 69909 ||||| || | | | | || | ||| ||| || ||||||| || || |||| | Sbjct 2814 GGATCAGCAAGTATTTTTAACAAAGCGGAAGCGAAAAATATTGAAGGTAAAAAAATACTT 2873 Query 69910 GTAGAATGTAAAGGGAGTTTGAA----AGATACGTTGATTGAAATGGAACAAGATCTTCA 69965 || || |||||| || || ||||| | | ||||||||| ||||| | || Sbjct 2874 GTTCCATATAAAGG----TTCAATTGCTGATACTTATAAAGAAATGGAAGAAGATTTACA 2929 Query 69966 ATCTTCAATTTCTTATGCTGGTGGTAAAGATTTATTAGCAATTA-GAAATGTAGATTATG 70024 |||| | |||||||||||||| ||||||||||||| ||| | | |||||| ||||||| Sbjct 2930 ATCTGCTATTTCTTATGCTGGCGGTAAAGATTTATCTGCATTAACAAAATGT-GATTATG 2988 Query 70025 TCGTTGTTAA 70034 | ||||||| Sbjct 2989 TTATTGTTAA 2998 >seq202020 Length=1115 Score = 289 bits (320), Expect = 9e-73 Identities = 532/774 (69%), Gaps = 27/774 (3%) Strand=Plus/Minus Query 188674 TTAGCTGTATCAGTTTATAATCATTATAAGCGCATT-AATGCTCTTAATGaaaaatcaaa 188732 ||||| ||| | |||||||| ||||||||| | || ||| ||| | |||| Sbjct 1078 TTAGCAGTAGCGGTTTATAACCATTATAAGAGACTTGAAT-------ATGTACAATCCGG 1026 Query 188733 aaatgatgatggagtaaagatcaaaaaaTCTAATGTTCTTTTAGTTGGCCCTACTGGTTC 188792 ||| |||||| | || | || || || ||| || | || | || ||||| ||||| Sbjct 1025 CAATAATGATGTTG---AGCTTAATAAGTCGAATATTTTATTGATCGGTCCTACCGGTTC 969 Query 188793 AGGTAAAACATTATTTGCTCAAACATTGGCTGATATGTTACATGTACCTCTAGCTATCTC 188852 ||| ||||| ||| |||||||||| | ||| | || ||| | |||||| | |||| | Sbjct 968 AGGAAAAACTTTACTTGCTCAAACGCTTGCTAAAATTTTAGACGTACCTTTTACTATGGC 909 Query 188853 TGATGCAACTTCTTTAACAGAAGCTGGTTATGTAGGTGAAGATGTGGAAAACGTATTGCT 188912 ||||| ||||||||||| ||||| |||||||| ||||||||||| || || |||| || Sbjct 908 GGATGCTACTTCTTTAACGGAAGCCGGTTATGTCGGTGAAGATGTTGAGAATATATTACT 849 Query 188913 TCGTTTAATCCAAGCAGCTGATTACGATATCGAATTAGCGGAACGTGGAATTGTATATAT 188972 |||||| | ||||||||| | |||| | | ||| || || || | ||||| Sbjct 848 ACGTTTATTGATAGCAGCTGAGTTTAATATAGCAAAAGCACAAAAAGGTATAATTTATAT 789 Query 188973 CGATGAAGTAGATAAAATTGCTAGAAAATCAGAAAGCACATCCATTACCCGAGATGTATC 189032 || || || ||||||||||| | ||||| || | | || ||||| || |||||||| Sbjct 788 TGACGAGGTTGATAAAATTGCCCGCAAATCGGAGAATCCTTCTATTACACGGGATGTATC 729 Query 189033 TGGCGAAGGAGTACAGCAAGCTTTATTAAAAATCATTGAAGGTACAGTTGCGAAAGTTCC 189092 || |||||||||||||| || ||| | ||||| || ||||| |||||||| || || Sbjct 728 GGGTGAAGGAGTACAGCAGGCATTACTTAAAATTATGGAAGGAACAGTTGCTTCTGTGCC 669 Query 189093 TCCTCAAGGTGGTCGTAAACACCCTCACCAAGAAATGCTTGAAATAGATACAACTAATAT 189152 ||||||||||||| | |||||||| || ||||| | | | ||||||| | ||||| Sbjct 668 TCCTCAAGGTGGTAGGAAACACCCGCAACAAGATTTCGTACAGTTAGATACTTCAAATAT 609 Query 189153 CTTGTTTATTCTTGGTGGAGCGTTTGATGGTCTTGAAAACATTATCAAGAGACGCGCTA- 189211 ||| |||||| ||||| || ||| || |||| | |||||| | | | ||| Sbjct 608 CTTATTTATTTGCGGTGGTGCTTTTATGGGAATTGATAGCATTATAACCTCAAGAACTAA 549 Query 189212 -CAAAATCAACTTTAGGTTTTGATGATAGTGTAGATAAAGTACAAGAAGAAATCAAGGAT 189270 || | | || |||| |||| | || |||| ||| || |||| ||| || | | Sbjct 548 TCATAGT--TCTATAGGCTTTGCAGCTAATGTAAATATAGATAAAGAGAAAAATAATGGT 491 Query 189271 GACAATAAAGTATTCCAACATCTTCAACCGCAAGATATTGTTAAGTATGGTTTAATTCCA 189330 || | | || || | || ||||| | ||| | ||||||||||| Sbjct 490 GAGATTCTTAAATCCCTGGAGATT------GAAGATTTAACTAAATTCGGTTTAATTCCT 437 Query 189331 GAATTTATTGGGCGTGTACCAGTAATCGCAACT-CTTAACA--AACTTGATCGAGATGCA 189387 |||||||| || | |||| |||| ||| ||| | | | || || ||| || Sbjct 436 GAATTTATCGGTAGGTTACC---TATCGTTACTACTTTAGATGAGCTAGACAAAGAAGCT 380 Query 189388 TTGATTAACATTTTAACTGAGCCGCAAAACGCTATCATTAAACAATATCAGAAA 189441 || |||| ||| ||||| |||| | || ||||| | || |||||||||||| Sbjct 379 TTAATTACAATTCTAACTAAGCCTAAGAATGCTATAGTAAAGCAATATCAGAAA 326 >seq17329 Length=11852 Score = 136 bits (150), Expect = 1e-26 Identities = 414/628 (66%), Gaps = 30/628 (5%) Strand=Plus/Minus Query 53990 TATGGCGATTTCAAAGTTTTATAAAGATTATGCTTTAAAAACA---AACGATAAAAAATT 54046 ||||| |||| ||| |||||||| |||||||||||||| || | |||| ||| Sbjct 10678 TATGGGTATTTTAAAATTTTATAATTCTTATGCTTTAAAAAGTTTTAATGGTAAACAAT- 10620 Query 54047 CTACTTAGAATCTTATGAAGATCGTATTGCTATTGTTTCTTTATTCTTAGGACAAGGTAA 54106 | |||||| |||||||||| | ||| ||| | |||||| || | | ||||| Sbjct 10619 --ATTTAGAAAATTATGAAGATAGAGTTGTTATGAATAGTTTATTTTTTGCTGATGGTAA 10562 Query 54107 T-TTCAATAA---AGCAAAAAGTTTAGCTGTTTCTATGATTGAACAAAGATACCAACCAG 54162 | || || | || |||| || || | |||| || |||| ||||||| Sbjct 10561 TATTGAACATGCTAGTAAAATTTTAAGACAAAT-TATGTCTGGT---AGATTTCAACCAG 10506 Query 54163 CTACTCCAACTTTCCTAAATGCTGGTAGAAGCAGACGCGGAGAAATGGTTTCTTGTT-TC 54221 ||||||| || || ||||||| || | || | | || ||| ||| |||| || Sbjct 10505 CTACTCCCACATTTTTAAATGCAGGGAAAAAACAAAGAGGTGAATACACTTCATGTTATC 10446 Query 54222 TTATTAGAAATGGATGATAGCTTGAATTCAATTGGTTTCAATATCAATACTGCAATGCAA 54281 || ||| ||| || |||| | || | ||||||| | ||| | |||| || | || Sbjct 10445 TT-TTACGAATTGAAGATAACATGGAATCAATTGCTCGAGCTATTACTACTTCATTACAG 10387 Query 54282 TTATCTAAAATTGGCGGCGGCGTTGCCTTAAACCTTTCTAAACTTAGAGGAAGAAAAGAG 54341 ||||| ||| ||| || || ||||| || | | || | |||| | || | Sbjct 10386 TTATCAAAACGTGGTGGTGGAGTTGCTTTGTGTTTAACAAATTTAAGAGAATTTGGAGCG 10327 Query 54342 CAAATTAAAGGTATTGATGATGCTGCTTCTGGAGTAGTACCAGTTATGAAACTTTTAGAA 54401 | ||||||| |||| | || || | || || | || ||||||||| || | ||| Sbjct 10326 CCAATTAAAAATATTAAAAATCAAGCAACAGGGGTTATCCCGGTTATGAAAATTCTTGAA 10267 Query 54402 GATAGCTTCTCTTATGCTAATCAGCTTGGCCAAAGAAAAGGCGCTGGAGCTGTTTACTTA 54461 ||| || || ||||||||||| || || |||||| |||| ||||| || ||||| ||| Sbjct 10266 GATTCATTTTCATATGCTAATCAACTAGGTCAAAGACAAGGTGCTGGGGCAGTTTATTTA 10207 Query 54462 AA----CATCTTCCACTGGGATATTATTGAATTCTTAGATACTAAAAAGATCAATGCTGA 54517 || |||| |||| |||||||| ||| |||||| | || ||||| || Sbjct 10206 AATGTTCATCATCCA----GATATTATGTTATTTTTAGATTCAAAGCGTGAAAATGCAGA 10151 Query 54518 TGAAAAAGCCAGAATTCAATCTTTATCTATTGGATTA---ATTGCTGAAAAAATCTTCTT 54574 ||||||| | ||| |||| | ||| | ||| || ||| |||| | | || || Sbjct 10150 TGAAAAAATTCGTATTAAATCAATGTCTTTAGGAGTAGTTATTCCTGATATTA-CT--TT 10094 Query 54575 CCAATTAGCAAAAAGAAACGAAGAAATG 54602 |||||||||||| || ||| | ||| Sbjct 10093 TGAATTAGCAAAAAATAATGAACAGATG 10066 >seq115160 Length=3097 Score = 109 bits (120), Expect = 2e-18 Identities = 349/527 (66%), Gaps = 21/527 (4%) Strand=Plus/Plus Query 309187 GGAAGTTTAATGTTTGATATTGCTTTAGGG---AATGGTATACCAAAAGGTCGTATTATT 309243 |||||| || | || ||| | |||||| || ||| | |||||||||||||||||| Sbjct 2465 GGAAGTATATTATTAGATGATATTTTAGGTGTTAAAGGTTTTCCAAAAGGTCGTATTATT 2524 Query 309244 GAGTTTTTTGGGGCAGAATCTTCAGGTAAAAC-AC-TTTGCGCTACACGAGCAATGGCTC 309301 || ||| ||| |||||||| |||||||||| || || || || | | || | || Sbjct 2525 GAAGTTTATGGACCAGAATCTGCAGGTAAAACTACATTAGCATTA-ATG-GCTTTAGCAG 2582 Query 309302 AAGTGCAACAACAAGGTGGTATTTGTGCTTTAATAGATATGGAACATGCATTCGATCCT- 309360 |||| ||| ||||| ||||| || || |||||| ||||||||||| |||| | Sbjct 2583 AAGTTCAAAAACAAAATGGTAGAATAGCATTTATAGATGCTGAACATGCATTAGATCGTC 2642 Query 309361 AGTTTTGCCGCAAAATTAGGTTTAAACTCTGATGATTTATTCTTATCACAACCAGA-TCA 309419 | | | | | |||||||||| | | | | |||||| | |||||||||| ||| Sbjct 2643 AATATAGTC-AAAAATTAGGTGTTGATATTAGTCGTTTATTAATTACACAACCAGATTCA 2701 Query 309420 TATGCAAGATGCTTTTGCGGTAATTGATGCATTAATTGATTCTGGCGGTGTAGATATGAT 309479 | || | || || | || | ||| | || | || | | | |||||||||| Sbjct 2702 GGAG-AACAAGCATTAGAAATACTAGATATTCTTGTTAAATCAGAGGCTTTAGATATGAT 2760 Query 309480 TGTTTTAGACTCAGTTGCAGCGCTTGTTCCGAAAGAGGAGCTTGAAGGTGATGTTGGTAA 309539 |||| | || ||||| || || | ||||| || || ||||| |||||| | | | Sbjct 2761 TGTTGTTGATTCAGTAGCTGCATTAGTTCCACAAATTGAACTTGATGGTGATATGAATGA 2820 Query 309540 ACAAACAATCGGTCTTATTGCTCGTTATATGTCTCAATTCTTACGACGTATTACGCCTAA 309599 |||||||| ||| | || || | |||||| | |||||| |||| | || Sbjct 2821 TCAAACAATTGGTGCTCAAGCGCGATTAATGTCTAAGGCATTACGAAAAATTA-GTGGAA 2879 Query 309600 AGCTTCTCAAATGGGAGTAACTGTA-----ATCTTCATTAATCAAATTCGTGATGCAATT 309654 | || |||| | ||| |||| | || |||||||||||||| || | || Sbjct 2880 A-TATCGCAAA---AACTAATTGTATTGTTTTATTTATTAATCAAATTCGAGAAAAAGTT 2935 Query 309655 GGTGTAATGTATGGAGATCCAACAACGACTCCTGGCGGTAAAGCATT 309701 ||| | || ||||| |||| || || || || || |||||||| Sbjct 2936 GGTATTATATATGGTAATCCTGAAATAACACCCGGAGGAAAAGCATT 2982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587739019674368