Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_023722.1 Length=59231 Score E Sequences producing significant alignments: (Bits) Value seq133315 262 1e-65 seq70437 219 2e-52 seq3723 179 1e-40 seq539 167 9e-37 seq25928 131 6e-26 seq125646 127 8e-25 >seq133315 Length=1321 Score = 262 bits (290), Expect = 1e-65 Identities = 446/644 (69%), Gaps = 2/644 (0%) Strand=Plus/Minus Query 15642 GTCAACTCGTGTGGTCTTCCGATCGAGGGTCCCCTCGGCTACCTCGCCACGAAGGGATTC 15701 |||||| || || || || ||||||| || | ||| || |||| | || ||| Sbjct 975 GTCAACAGTTGCGGGCTCCCCGTCGAGGGCGCCGGCAACTATCTGACCACCGACGGTTTC 916 Query 15702 GTGTCGTTCGCGATGTCCCCGGTGATGAAGGACGCCGAGGAGCTGACCCAGAACAACGCC 15761 ||||||||| |||||||| ||||||||||| | ||| | ||| | ||||| Sbjct 915 GTGTCGTTCAAAATGTCCCCCAACATGAAGGACGCGAACGAGATCGAGCAGGAGAACGCG 856 Query 15762 GAGGGACGCGAATGTGTCTCCGAGCGCACGCCTCCGGAGCGCAAGTGGTACAACCTCACG 15821 |||||| | || || |||| ||||| || || ||||||||||||||| ||||| | Sbjct 855 CAGGGACAGGTGTGCATCACCGACCGCACCCCGCCCGAGCGCAAGTGGTACGACCTCGAG 796 Query 15822 CTGACCCTCTGCGGCGTGAATACGGCCCTGATCGCGATGTTCTCCGGCTGGGAACAGGTC 15881 ||| |||| ||||| ||||| | | |||||| | ||| || || ||| | |||| Sbjct 795 CTGGCCCTGTGCGGGGTGAACTCCGAGCTGATCACCATGCTCAACGCGTGGAAGCAGGAA 736 Query 15882 CTCGACTGGGAGGGGAACGCCGTCGGCTTCCGCGACCAGAAGGAGGTCGAAAGCGATTAC 15941 |||||| |||| || | ||||||||||||||||||||| |||||| || ||| Sbjct 735 GTCGACTACAAGGGCGACTCGGTCGGCTTCCGCGACCAGAAGCGCGTCGAATCGGACTAC 676 Query 15942 GGTGTCGCGATCGAGATCTGGTCCGGCGGTTCGGCCGAGGACGACTGCGCCGTCCCCGAC 16001 ||||| || | || |||||| ||||||| |||||| ||||| ||| || |||| | Sbjct 675 GGTGTGGCCCTGGAAATCTGGACCGGCGGCAAGGCCGACGACGATTGCCCCACCCCCACC 616 Query 16002 GATGACACGATCTTCGACAGCGTCACCTCGGGTAAGTCGTACGGCTACTTCCTCACCTTC 16061 | ||| || |||| || ||| || || || ||| || ||| | || || | Sbjct 615 GGCGACGATATTTTCGCCACGAGCACGTCCGGCAAAAAGTATGGGTACCTGCTGACGTGG 556 Query 16062 GGTAAGGAGTGGACCCTCGGCGACATCGAGAT-CAGCGCGGCGGTAGCGAACTTCACCCT 16120 || | |||| || ||||||||||| ||| | ||| |||| || || ||||||||||| Sbjct 555 GGCACCGAGTTCACGCTCGGCGACATTGAGGTACAG-GCGGACGTCGCCAACTTCACCCT 497 Query 16121 CACGGGTATCTCGTTCGCCGCTCCCCAGTGGGGCCGTGGTCCGTGGAACGTCGTTCCCAC 16180 | |||| ||| |||| | || |||||||| ||||| |||||||| || || ||| Sbjct 496 CTCGGGCATCAGCATCGCTGGCCCGCAGTGGGGTCGTGGCCCGTGGAATGTTGTCGCCAT 437 Query 16181 GGACGCCTCCGGTACCCCCGGCCGTCTGATCACCGCGCTCAACAACGACCAGCACTATGA 16240 || | | | || | |||||||||||||| | | | | |||||||| | Sbjct 436 CGATGACGACAACACGGCTGGCCGTCTGATCACTCCTCCGGATGATGACCAGCATTTCAT 377 Query 16241 GGTCCAGCGGACCTCGGTCGCTCCCCCGGCTCCGACGCCGGCCG 16284 | ||||| ||| || |||| || |||| |||| ||| ||| Sbjct 376 TCTGCAGCGCACCCCGATCGCGCCGCCGGAGTCGACACCGTCCG 333 >seq70437 Length=1356 Score = 219 bits (242), Expect = 2e-52 Identities = 473/700 (68%), Gaps = 47/700 (7%) Strand=Plus/Minus Query 9182 TGGATCTGCACGCTGGACAGCAAGACCCGAGACTCCCACTTCGCCGCCGACGGACAGCGC 9241 |||||||||||||| ||| | ||||| || | | |||||| ||| |||||||| ||||| Sbjct 884 TGGATCTGCACGCTCGACGGGAAGACTCGCGCCGCCCACTACGCGGCCGACGGGCAGCGG 825 Query 9242 GTCTCCCTCGGTGCGAAGTTCACCGTGGGGTCCTCCGAACTGGAGTACCCCGGCGACCCC 9301 || | ||| | |||||| ||||| || ||| |||| ||| || || || Sbjct 824 GTAGCGGTCGACGGCAAGTTCGATGTGGGCGGCTACGAGATGGAAGGCCCGGGAGATCC- 766 Query 9302 GAAGGACCCGCCCACGAGGTC-ATCAACTGTCGTTGTCGGGTTGCGGTCCTGGCCGCCGA 9360 ||| | |||||| | || |||||||| || || ||| || || || || | || Sbjct 765 GAACGCCCCGCCTGAGCTTTCGATCAACTGCCGCTGCGCGGTGGCTGTTCTCGCACCGGA 706 Query 9361 CGAACC-CTCCCCGATGGAGTTCGACCGGCACACCGAGCGCGGCGAAGGCGACTCGACGG 9419 ||||| ||||| | | || | |||||||||||||| |||||| |||||||| || | Sbjct 705 TGAACCTCTCCCAGCAG-AGATGGACCGGCACACCGAACGCGGCCCCGGCGACTCCACCG 647 Query 9420 TGAAGAACCGCACGGGGTCTCGTCAAGATGAGATCGACAGACGGGCCGAGGACGGCGTGA 9479 | |||||||| | || | | || ||||||| |||||||||||| |||||| | Sbjct 646 TCAAGAACCGGTCCGGCACACAATCCGACGAGATCGCCAGACGGGCCGACGACGGCAACA 587 Query 9480 TCCGCGCCATCGACGACCCGAACGGAGTCGGACGTGTCGCGTCCGCAGC-ACCAGAGGAG 9538 |||| ||| ||||||||| |||| |||| | || | ||||| | | | ||||| Sbjct 586 TCCGAGCCCGCGACGACCCCGACGGTATCGGGCACGTAG---CCGCATCTATCGAAGGAG 530 Query 9539 AACAACGTGGCCGACGAC------GTCGA--CACC----------CCGG-AGAT------ 9573 | | | ||||||||||| | ||| |||| |||| |||| Sbjct 529 CA-ACCATGGCCGACGACCAGACAGACGATGCACCGAACGACGCGCCGGAAGATAATGCT 471 Query 9574 -----------GTACCGCACCTTCACCGAC-CAGCCGCTCGGCGTACTCGGTGAGCCGAC 9621 ||||| || ||||||||| | ||| ||| ||||||| | || Sbjct 470 CCGGCGGGTGACTACCGGACGTTCACCGACGCCACCG-TCGCACTACTCGGCACCTCCAC 412 Query 9622 CGAGGACCGGCGCCTCCTGGCCGCCGACATGGAGGTCTCGTTCCGGGACTTCCCCCTCCC 9681 ||| ||| ||||| | || || | ||||| || ||| | ||||| ||||||||| || Sbjct 411 CGACGACGGGCGCATGCTCGCATCGGACATCGACGTCACCTTCCGCAGCTTCCCCCTGCC 352 Query 9682 GCTCATGTGGGTCGAACAGACCAGCCAGGCGCACATGAACGGTTACGTCGTCGGCGTCAT 9741 ||| |||||||| | |||||| || | ||| |||| ||| ||||||||||| Sbjct 351 GCTGATGTGGGTGAAGCAGACCGGCTTCGGACACGACAACGCCTACACGGTCGGCGTCAT 292 Query 9742 CGAGTCCGGCCGCGTCGAGGACGGTCGGGTCCTGTGCTCGGGGTACATGCTCAACACCGA 9801 ||| ||| || ||||| | || |||| || || || |||||||||| || Sbjct 291 CGAAGCCGCACGTGTCGACGGCGACGCCATCCTCGCGTCCGGTTATCTGCTCAACACGGA 232 Query 9802 GGAGGCGGACAAGGCCGCCGACCTGATCGGGCACGGGGTC 9841 |||||| || |||| ||||||| ||||| |||||| ||| Sbjct 231 CGAGGCGAACGAGGCTGCCGACCAGATCGAGCACGGCGTC 192 >seq3723 Length=1841 Score = 179 bits (198), Expect = 1e-40 Identities = 358/528 (68%), Gaps = 17/528 (3%) Strand=Plus/Plus Query 1932 CCGGCTTGGCGAAGGCACCACAGAGGCACTCCCCGGACATGTGGATCAGGTCGGAGACCT 1991 ||||||||||||| ||||| || | ||||||||| |||||||||||||| ||||| ||| Sbjct 482 CCGGCTTGGCGAACGCACCGCACAAGCACTCCCCCGACATGTGGATCAGATCGGACACCC 541 Query 1992 GGTTCACCGGGACGTCGCCCAT---------CATCGTCCGGTAGGTGTTCATGTCCAGCT 2042 ||||| || || | || | ||| ||| ||||| ||||| || |||| Sbjct 542 TATTCACTGGAACAGGGTCCGTGCCACGGTGCATGAGCCGATAGGTATTCATATCGAGCT 601 Query 2043 TGGTCCACATCGCCAAGGGGGACGCCCAGATCACCGAGTCGATCCGCTCGTGGA--GGAC 2100 | | |||||| || | || |||||||| ||||| || | || || | | ||| Sbjct 602 TTGACCACATGGCGAGAGGCGACGCCCAAATCACAGACCCTTCGCGTTCATACAAAGGAA 661 Query 2101 GATGTTCGCCCGCCGCGCGGACTCCTCCCGGCGGCGCCCAGCCAGGAACACCACGCGCTG 2160 || | | ||||| | || || ||| || || || |||| ||| | || |||| Sbjct 662 TATCT--GATCGCCGTTCAGATTCAAGCCGCCGACGACCGGCCATGAATAGGACACGCTC 719 Query 2161 GCGGCGTCCGTCGGTGACCAGCTTCCGGCGTGCCTGACGGAGGCCGCGCTCCTTCAGTCG 2220 | | || | || ||||||| || || || || || ||||| || ||||| Sbjct 720 CTTTCCGCTATCTGCAACGAGCTTCCTACGCGCTTGCCGCAGCGGACGCTCTTTGAGTCG 779 Query 2221 CTGGTACATCTTGAAGTGATGGCCGGGACCGGGGAATCCCTGCTCGACGACCAGGTCCCG 2280 ||||||||| || |||| || || || ||||| ||||| || | |||| | ||| Sbjct 780 CTGGTACATTTTCCAGTGCATCCCTGGGCCAGGGAAACCCTGATCCATCACCAACTGCCG 839 Query 2281 GTAGCT--GGTGTCCGGCTTCTCCTCCAGGAGCGGGAGTCCCCACGCCGCGCACGTGTCG 2338 | | || || | | | ||||||| || | ||| | |||||| || ||| |||||| Sbjct 840 GAAACTCCGGGGAGCAG--TCTCCTCAAGCAACGGCAATCCCCATTGCGTGCAGGTGTCG 897 Query 2339 CGGACGAACTGACGGGTCTCCTCGATTCCGATGGTGGTGTTCGCGTGGATCGCCCACGAG 2398 || |||||||| | ||| || || || |||||||| ||||| ||||| ||||| | Sbjct 898 CGCACGAACTGTCTGGTTTCTTCAATGCCGATGGTAGTGTTTGCGTGAATCGCATGTGTT 957 Query 2399 GCACGCTCCCGGACGAGGTGGGCGAGGACCGTCGAGTCGTTGCCTCCG 2446 || | ||| | |||||||| ||||| || || || || |||||| Sbjct 958 GCGTAGTGCCGCATCAGGTGGGCTAGGACAGTGGAATCATTTCCTCCG 1005 >seq539 Length=1209 Score = 167 bits (184), Expect = 9e-37 Identities = 328/479 (68%), Gaps = 16/479 (3%) Strand=Plus/Minus Query 10187 GGCCGCGTCTTCGGCCACCTCGCCTGTTTCGGCACGTGCCACACGGGGTTCAAGGATCAG 10246 |||||| || ||| |||||||| || ||||| | ||||| |||||||| || ||| Sbjct 1024 GGCCGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCATGTGGGGTTCACCGACCAG 965 Query 10247 TGCGTCGTGGCGCCGCGGTCGATGTCGGGATACAAGCACTTCCACACCTCGA-AC--GTC 10303 ||||| ||| || | || | | || ||| |||||||||||| | || || Sbjct 964 TGCGTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCACACCGCCCCACCGGTG 905 Query 10304 ACGACGTCCCAGGGT---CTTCTGGCGGTCGGCCGTCTGACCGTCAACACCGGGCACGCC 10360 | | | | ||| | ||| | |||||| | || ||||| ||||||||| ||| Sbjct 904 ATGCTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCATGCC 845 Query 10361 GGGCCTCGGCTGTCGGCGGAGAAG--GCCGTAGCCCACTACGACGACACCGGAACGTGTT 10418 ||| ||| | | || | | |||| ||||||||||||| ||||||| || || | Sbjct 844 GGG--TCGAAAGCCCCCGCCCATGCTGCCGCAGCCCACTACGACAACACCGGCACCTGCT 787 Query 10419 TCGCCCTCGTCCGTGCCGGCGAAGACGAGCACGGGATCTGGGTGTCGGGCATCGTCAACC 10478 ||||||||||||| |||||||||||||| ||||| ||||||||||||||| | | | | Sbjct 786 TCGCCCTCGTCCGCGCCGGCGAAGACGAACACGGCATCTGGGTGTCGGGCGTGGCCGCAC 727 Query 10479 CCGTCGCCTCCGAGGAGGCGGTGACCGCCGGTCTCCAGTCCCCGCTGTCGGGCGACTGGC 10538 | | | | | || | || ||||| ||| | | || |||| || || |||| Sbjct 726 CTGGCACTGACAGCGAAACCCTGCAGGCCGGGCTCGCGGCACCCTTGTCCGGGGATTGGC 667 Query 10539 GCAAGCGCGGCGGACACCTCGAACTCGTTGCGGCCCTGGCCGTGAACGTCCCCGGCTTCC 10598 | || |||||| || | || ||||| || ||||| || |||||| || || |||| Sbjct 666 GGCAGATCGGCGGCAACTTGGAGCTCGTCGCCGCCCTCGCGGTGAACACACCGGGTTTCC 607 Query 10599 CCATCGTCGCGTCCGCCGCGGGCGACGGCATGGACGACCAG---CTCTCGCTCGTCGCG 10654 | ||| | ||||| | || | || || ||||||||| ||| | ||||||||| Sbjct 606 CGATCATGGCGTCGGGTGC---CACCGATATTGACGACCAGCCCCTCGCTCTCGTCGCG 551 >seq25928 Length=1163 Score = 131 bits (144), Expect = 6e-26 Identities = 180/245 (73%), Gaps = 5/245 (2%) Strand=Plus/Plus Query 18438 CCGAGTTCTACAACGCTTGCACCGGAGGCAAGTGCAAGCTCCCCCGCCGCGTCACCTCGA 18497 ||||||||||| | || ||||| || || |||||| ||| || || || ||| ||| Sbjct 166 CCGAGTTCTACCAAGCGTGCACGGGCGGGAAGTGCCGGCTTCCGCGGCGGGTCGAATCGG 225 Query 18498 TCTCCCGCCAGGGCGTCAGC-TACGAGATGGCCGACCCCACCGACATCTACGCGTCCGGC 18556 | ||||||| ||||||||| | || |||| ||| || | | |||||| | ||| Sbjct 226 TTACCCGCCAAGGCGTCAGCATGCG-CATGGTCGATCCGAGCTCCATCTATCAGGACGGG 284 Query 18557 AAGACGGGCCTGCCCGACATCGACCTCTGGTTGGCATCGGTGAACCCGAACGCGCTCACC 18616 ||||| || || | || ||||| | ||| || | |||||||||| |||||| || || Sbjct 285 AAGACAGGTCTCGCGGAAGTCGACATGTGGCTGTCCGCGGTGAACCCCAACGCGATCCCC 344 Query 18617 GCCGCGCCGAGGGTGAGGTGATCCGATGCACGACCCT-TTGAGTTGCGCCGTCGACCACA 18675 ||||||||||| ||||||||| | ||||| ||| | |||| |||| | || |||||| Sbjct 345 GCCGCGCCGAGCGTGAGGTGA-CTGATGCCCGATAATGCTGAG-TGCGTCATCAACCACA 402 Query 18676 CGATC 18680 |||| Sbjct 403 TGATC 407 >seq125646 Length=2033 Score = 127 bits (140), Expect = 8e-25 Identities = 248/359 (69%), Gaps = 8/359 (2%) Strand=Plus/Minus Query 7325 CACCTGAAGTTCGACAGCGACGTCTCCGAGACCGCGCTGAAGACCCGACAGGACGCGATC 7384 ||| | |||||||| ||| || ||||| || || ||| || || | |||||| Sbjct 357 CACGTCAAGTTCGATTCCGAAGTGTCCGAAACGTCGTTGACCACGCGGGATTCTGCGATC 298 Query 7385 CGCCGTCTGGCGATGTCCCTGGACATCTCGCCCGAACGGCTCCTCGGCCTGGGCAACAAC 7444 ||||| |||| ||||||||| | | |||||||||||||| | || ||||| | || Sbjct 297 CGCCGGTTGGCCATGTCCCTGAAAGTGTCGCCCGAACGGCTGTTGGGGATGGGCGAACAC 238 Query 7445 TCGAACCACTGGACCGCGTGGCAGATCAACGACGACGACGTTCGCGTCCACATCGCCCCG 7504 || ||||||||||||||| | | || |||| |||||| || |||||| |||| Sbjct 237 TCCAACCACTGGACCGCGGCCCTGCTCGACGAGACCGACGTCAAGGTACACATCTCCCCA 178 Query 7505 GTCCTGGAAACGATCTGTGAGGCGATCA-CCGCGAACATCCTCCGCCCCGCGCTGGA--G 7561 | |||| |||||||| || || |||| ||||| | |||| || ||||| || || | Sbjct 177 CTGTTGGAGACGATCTGCGATGCCATCACCCGCG-TCGTCCTGCGGCCCGCACTCGAACG 119 Query 7562 GTCATCGGGAAGGACCCGTCGAAGTACGTCGTGTGGTTCGACGCGTCGGTCCTGACTAAG 7621 | | ||| | || || |||||| ||| |||| |||||| | ||||| | Sbjct 118 GGC--CGGCATCGATCCTGACAAGTACACCGTCTGGTACGACGCCACCCCACTGACCCAA 61 Query 7622 GATCCGGACCAGCGCGA-GGAGGCGAACGAGGCGTACGACCGCGGCGTGATCACCGCCG 7679 || ||||||| || | ||||| ||| || || ||||| || | | |||||| || Sbjct 60 GACCCGGACC-GCAAAACCGAGGCACGCGACGCCTATGACCGTGGGGCGGTCACCGGCG 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188957575207656