Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_023727.1 Length=68494 Score E Sequences producing significant alignments: (Bits) Value seq539 120 1e-22 >seq539 Length=1209 Score = 120 bits (132), Expect = 1e-22 Identities = 290/427 (68%), Gaps = 18/427 (4%) Strand=Plus/Minus Query 8204 GGGCCGGATATTCGGACACATCGCGTGCTTTGGTGCGTGCCACCGATCGGTGCAGA-ACG 8262 |||||| || ||||||| |||| ||||| || || ||||| | ||| || || Sbjct 1025 GGGCCGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCAT-GTGGGGTTCACCGACC 967 Query 8263 CGTGCGTCATGGCCCCGAAATCGCCGTCGAACTACGCACAGTTCCACACTTCGCCGCCGG 8322 |||||| ||| || | || | | | |||||| || |||||||| | || |||| Sbjct 966 AGTGCGTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCACACCGCCCCACCGG 907 Query 8323 TGCTGCTCGATGACGGCACCCGCCTCGCCGTGGGCCGCCTGACCGTCGGCACCGGGCACG 8382 || ||||||| |||| ||| ||| |||| ||| | || ||||| ||||||||||| | Sbjct 906 TGATGCTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCATG 847 Query 8383 C--AGACGAGCGGCTGCGTCCCGGCCCGGCCATGGCGCACTACGACAACACCGGATCGTG 8440 | | ||| | | || || | | ||| || ||||||||||||||||| | || Sbjct 846 CCGGGTCGAAAGCCCCCGCCCATG--CTGCCGCAGCCCACTACGACAACACCGGCACCTG 789 Query 8441 CTGGGCGCTGGTGCGTGCCTACG-AGACCAGCGTCGGAATCGAGGTGTCGGGCGTGGCCG 8499 || || || || || ||| || |||| | | ||| ||| ||||||||||||||||| Sbjct 788 CTTCGCCCTCGTCCGCGCCGGCGAAGACGAAC-ACGGCATCTGGGTGTCGGGCGTGGCCG 730 Query 8500 CCCCGTGGGCCAC---CCCCGAGCAGATCGAGATGGGCCTCGCCTCGCCGCTGTCCGGCG 8556 | || ||| ||| | ||| | || || ||||| | || ||||||| | Sbjct 729 CACC-TGG--CACTGACAGCGAAACCCTGCAGGCCGGGCTCGCGGCACCCTTGTCCGGGG 673 Query 8557 ATTGGCGGGATTTCG--GGCAGGGCCTCGATCTGATCGCCGCCCTGAGCGTCAACACGCC 8614 |||||||| | ||| |||| | | || || |||||||||| || ||||| || Sbjct 672 ATTGGCGGCAGATCGGCGGCA--ACTTGGAGCTCGTCGCCGCCCTCGCGGTGAACACACC 615 Query 8615 CGGTTTC 8621 |||||| Sbjct 614 GGGTTTC 608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 218509994431580