Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_023732.1 Length=69279 Score E Sequences producing significant alignments: (Bits) Value seq5422 131 7e-26 >seq5422 Length=1306 Score = 131 bits (144), Expect = 7e-26 Identities = 227/329 (69%), Gaps = 6/329 (2%) Strand=Plus/Minus Query 44351 TTCCGTGGCATTGACGCGGTAATGAACGCGGTCGGCCCGGCTCTGCGCGCGCATGGCGTC 44410 ||||| ||||| ||||| |||||| | |||||||| || ||||| ||| || ||| Sbjct 875 TTCCGCGGCATCGACGCCACGATGAACACCGTCGGCCCCGCCCTGCGAAAGCACGGTGTC 816 Query 44411 ACGGTCGTGCCGGTGGCGAGTACACATGAAGCGGAGCGCTACCAGACCGCTAAGGGCGGG 44470 || | || | || | | || | ||||| |||||||| |||||||||||| Sbjct 815 GTCATCATCCCCGACGCCATGTCGATCGACTCCGAGCGGTACCAGACGGCTAAGGGCGGG 756 Query 44471 CAGATGTGCAACCGCACGGTCGAAATGTATTTCGACGTGTACGGGCCTGCTGGCGACAAG 44530 |||||| ||| ||| ||| | ||| | | ||| ||||| || | || |||| Sbjct 755 CAGATGAAGAACGCCACCGTCCACATGCGCTACACCGTTTACGGCCCGGAGGGTGACAGC 696 Query 44531 TTCC---GAGGCAAGGCGTTCGGCGAAGCTGCGGACTCCGGCGATAAGTCGATGACTAAG 44587 ||| || ||| ||| ||| ||||| |||||| | ||||| ||| || | | |||| Sbjct 695 TTCACCGGATGCA---CGTACGGGGAAGCAGCGGACGCTGGCGACAAGGCGGTCAGTAAG 639 Query 44588 GCGGAATCGGTCGCGCTGAGGACGTTCCTGCTGCAATCGCTGATGATTCCGACTGACGAT 44647 ||| | || |||||| | |||||||||||||| |||| | | ||||| | || Sbjct 638 GCGCAGTCCGTCGCGTACCGCACGTTCCTGCTGCAGGGACTGACGGTGCCGACGCAGGAG 579 Query 44648 CCGGACCCTGACGCTGAGTCGCATGAGCG 44676 | ||||| ||||| || ||||| ||||| Sbjct 578 CGCGACCCCGACGCGGACTCGCACGAGCG 550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 221015733174240