Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_023741.1 Length=69641 Score E Sequences producing significant alignments: (Bits) Value seq539 138 5e-28 seq133315 123 1e-23 seq70437 118 5e-22 seq125646 87.8 8e-13 >seq539 Length=1209 Score = 138 bits (152), Expect = 5e-28 Identities = 282/415 (68%), Gaps = 18/415 (4%) Strand=Plus/Minus Query 8885 CGGTCACCTGGCGTGCTTCGGCGCGTGCCACCGCAGCATCCAGGCCGAGTGCGTGGTGGC 8944 ||| ||||| || |||||||| || ||||| | || | | ||||||| ||| Sbjct 1013 CGGACACCTCGCATGCTTCGGGGCATGCCATGTGGGGTTCACCGACCAGTGCGTTCAGGC 954 Query 8945 CCCGCGCAGCCGCACCGGGTACAGCATGTTCCACACCAGCCCGGCCGTACGTCTGGACGA 9004 || | | || ||||| ||| | ||||||||| ||| | || || ||| | Sbjct 953 ACCCCACTCCCAGACCGGCTACGCCCACTTCCACACCGCCCCACCGGTGATGCTCGACAA 894 Query 9005 CGGCACCAGCCTGCCGGTGGGACGGCTCACCGTGGGCAGCGGCCACGC--GCCCGACCAC 9062 ||| | | || || || || ||||||||||||||| ||| || || | ||| | Sbjct 893 CGGTGACCGTCTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCATGCCGGGTCGA--AA 836 Query 9063 GTGAGCGGCCAGGTGGCGGCAGCGCACTACGACACCGCCGGTACCTGCTTCGCCCTGGTG 9122 | || ||| | || ||||| |||||||||| | |||| |||||||||||||| || Sbjct 835 GCCCCCGCCCATGCTGCCGCAGCCCACTACGACAACACCGGCACCTGCTTCGCCCTCGTC 776 Query 9123 CGCGTAGGTGAGGACGCACACGGCATCTGGTTCAGCGGCGTGGCCGCGCCCTGG----GC 9178 |||| || || |||| ||||||||||||| | ||||||||||| ||||| | Sbjct 775 CGCGCCGGCGAAGACGAACACGGCATCTGGGTGTCGGGCGTGGCCGC-ACCTGGCACTGA 717 Query 9179 CACCG---CCGAGCAGATCGAAATGGGACTGGCCGCGCCGTTGTCCGGCGACTGGCGCGA 9235 || || || |||| | || || || || || |||||||| || ||||| | Sbjct 716 CAGCGAAACCCTGCAGGCC------GGGCTCGCGGCACCCTTGTCCGGGGATTGGCGGCA 663 Query 9236 CTTCGGCCAGGGCCTGGAGCTGGTGGCCGCTCTGGCGGTGAACACGCCCGGTTTC 9290 ||||| | ||||||| || ||||| || ||||||||||| || |||||| Sbjct 662 GATCGGCGGCAACTTGGAGCTCGTCGCCGCCCTCGCGGTGAACACACCGGGTTTC 608 >seq133315 Length=1321 Score = 123 bits (136), Expect = 1e-23 Identities = 233/342 (68%), Gaps = 3/342 (1%) Strand=Plus/Minus Query 15091 GCAGGACAACGCCGAGGGCAAGGAGTGCTTTACCGACCGCACCCCGCCCGAGCGCCGCTG 15150 |||||| ||||| |||| ||| |||| | |||||||||||||||||||||||| || Sbjct 868 GCAGGAGAACGCGCAGGGACAGGTGTGCATCACCGACCGCACCCCGCCCGAGCGCAAGTG 809 Query 15151 GTACACCCCAGCTCTGGAGCTGTGCAACGTGAACACTGGTCTGCTGACCATGTTCACCGG 15210 |||| || | |||| |||||| |||||| | | ||| | |||||| ||| || Sbjct 808 GTACGACCTCGAGCTGGCCCTGTGCGGGGTGAACTCCGAGCTGATCACCATGCTCAACGC 749 Query 15211 CTGGGAGTCGGTGCTTGATGCCAACGACCTGCCCGTTGGCTACCGCGACCAGAAGGAAAT 15270 ||| || || | || ||| | | | || |||| ||||||||||||| | Sbjct 748 GTGGAAGCAGGAAGTCGACTACAAGGGCGACTCGGTCGGCTTCCGCGACCAGAAGCGCGT 689 Query 15271 CGAGACCGACTTCGGCATCGCGCTGGAGCTGTGGACCAGCGGCAAGTCCGACGAGGACTG 15330 ||| | |||| ||| | || ||||| | |||||| |||||||| ||||||| || || Sbjct 688 CGAATCGGACTACGGTGTGGCCCTGGAAATCTGGACCGGCGGCAAGGCCGACGACGATTG 629 Query 15331 CGCCGACATCCCCACTTCCGACGCCGTGTTCGCCGCTGCCGGGTCGGGCCGGAGCTACGG 15390 | | || |||||| ||||| | |||||| | | ||| ||| | || || Sbjct 628 CCC---CACCCCCACCGGCGACGATATTTTCGCCACGAGCACGTCCGGCAAAAAGTATGG 572 Query 15391 CTACTTCCTGTTCGGCGGCACCGAGTGGACCCCTGGTGACAT 15432 ||| | ||| | |||||||||| || | || ||||| Sbjct 571 GTACCTGCTGACGTGGGGCACCGAGTTCACGCTCGGCGACAT 530 >seq70437 Length=1356 Score = 118 bits (130), Expect = 5e-22 Identities = 458/704 (65%), Gaps = 28/704 (4%) Strand=Plus/Minus Query 7827 CTGGAGAAGGTGTGGATCGCCACTATCGACGGTAAGACGCGGCATACGCACTTCGCCGCC 7886 ||| |||| ||||||| ||| ||||||| ||||| || | |||| ||| ||| Sbjct 896 CTGCAGAAAACGTGGATCTGCACGCTCGACGGGAAGACTCGCGCCGCCCACTACGCGGCC 837 Query 7887 GACGGCCAGCGCGCACCCCTCGCCGGTAAGTTCACGGTCGGTGCCGCGCTGCTGGACTTT 7946 ||||| ||||| | | | ||| ||| |||||| || || | | | |||| Sbjct 836 GACGGGCAGCGGGTAGCGGTCGACGGCAAGTTCGATGTGGGCGGCTACGAGATGGAAGGC 777 Query 7947 CCAGCGGACCCCGCAGGCCCGGCGGCAGAGGTCAAG-AACTGCCGCTGCCGGGTCGGCAT 8005 || | || || | | |||| || || || | |||||||||||| ||| | | Sbjct 776 CCGGGAGATCC-GAACGCCCCGCCTGAGCTTTCGATCAACTGCCGCTGCGCGGTGGCTGT 718 Query 8006 CCTGGCACCGGACGAGGAGCTGCCCGATGAGGTCGACCGGCACACCGAGCGCCTTAACGG 8065 || |||||||| || || || | ||| | |||||||||||||| ||| ||| Sbjct 717 TCTCGCACCGGATGAACCTCTCCCAGCAGAGATGGACCGGCACACCGAACGCGGCCCCGG 658 Query 8066 GCGCGACAGCGTGCAAGTCAACCGGCAGGGCAGCCAGTCCGACGAGATTGCCCGCCGGGC 8125 | || ||| |||| |||||| |||| || ||||||||||| ||| | ||||| Sbjct 657 CGACTCCACCGT-CAAG--AACCGGTCCGGCACACAATCCGACGAGATCGCCAGACGGGC 601 Query 8126 CAAGCAGGGCACGATCCGCGCCCGCGACGACGAGGACGGCGTAGGTCGAACGGCCAGCGC 8185 | | | |||| ||||| |||||||||||| ||||| | || | ||| || Sbjct 600 CGACGACGGCAACATCCGAGCCCGCGACGACCCCGACGGTATCGGGC--ACGTA----GC 547 Query 8186 CGCACCGAGCGAACAGGAGTACGACATGCCGCAGCCCACCCCGGCCGACACCGCCGCCGC 8245 |||| | | |||| |||| | |||| ||| || | | |||| | || || Sbjct 546 CGCATCTATCGAA--GGAGCAAC-CATG-----GCCGACGAC--CAGACA--GACGATGC 499 Query 8246 ACTGGCCGCATCCGCCG-ACGAGGACGC--CGCTGAGACATT-CCGCGTGTTCACCGACC 8301 || | || | ||||| | || | || || | | | | ||| |||||||||| Sbjct 498 ACCGAACG-ACGCGCCGGAAGATAATGCTCCGGCGGGTGACTACCGGACGTTCACCGACG 440 Query 8302 AGCCCATTGCCTTTGTTGGTATTGAGACCAGCGACGGCCGGATGCTGGCCACCGACATTG 8361 || | || | | || | ||| |||||| || ||||| || | ||||| | Sbjct 439 CCACCGTCGCACTACTCGGCACCTCCACCGACGACGGGCGCATGCTCGCATCGGACATCG 380 Query 8362 AGTTCAGCGTGCGTACCCCGCCGCTGCCAATGATGTGGACCAAGCAGACCGGGTATGGCC 8421 | ||| | | || | | || ||||| |||||||| ||||||||||| | || | Sbjct 379 ACGTCACCTTCCGCAGCTTCCCCCTGCCGCTGATGTGGGTGAAGCAGACCGGCTTCGGAC 320 Query 8422 ATGAGGACGCCTTTACGGTGGGCGTTATCGAGAGCGCCCGCGTGGACGGCGACACCATCC 8481 | || |||||| ||||| ||||| ||||| ||| || || ||||||||| |||||| Sbjct 319 ACGACAACGCCTACACGGTCGGCGTCATCGAAGCCGCACGTGTCGACGGCGACGCCATCC 260 Query 8482 GTGGGTCCGGCTACTGGTTGAACACCACCGAGGCCGACGAGGCT 8525 | |||||| || | | ||||| |||||| |||||||| Sbjct 259 TCGCGTCCGGTTATCTGCTCAACACGGACGAGGCGAACGAGGCT 216 >seq125646 Length=2033 Score = 87.8 bits (96), Expect = 8e-13 Identities = 168/245 (69%), Gaps = 12/245 (5%) Strand=Plus/Minus Query 6191 TGGCCATGGGCCTGGACGTGAGCCCCGAGCGGCTGCTGGGTCTGGGCAGCAACAGCAACC 6250 |||||||| |||| | ||| ||||| |||||| |||| ||||| || ||||| Sbjct 290 TGGCCATGTCCCTGAAAGTGTCGCCCGAACGGCTGTTGGGGATGGGCGAACACTCCAACC 231 Query 6251 ACTGGAGCGCCTGGCAGATCGGTGACGAG---GACGTACAGCTGCACATCAAGCCCGTGA 6307 |||||| ||| | | ||| ||||| ||||| || | |||||| || || Sbjct 230 ACTGGACCGCGGCCCTGCTCG---ACGAGACCGACGTCAAGGTACACATCTCCCCACTGT 174 Query 6308 TGGAGGTGCTGTGCGCGGCCATCTACCGCGAGGTGCTGGTGGCCACGCTCAA---GGCCG 6364 ||||| | | |||| |||||| ||||| || ||| | || | ||| | ||||| Sbjct 173 TGGAGACGATCTGCGATGCCATCACCCGCGTCGTCCTGCGGCCCGCACTCGAACGGGCCG 114 Query 6365 AAGGCATCGACCCCGACAAGTACGTGCTCTGGTACGACGCCAGCGGGCTGACCGTCGACC 6424 ||||||| || ||||||||| ||||||||||||||| | |||||| |||| Sbjct 113 ---GCATCGATCCTGACAAGTACACCGTCTGGTACGACGCCACCCCACTGACCCAAGACC 57 Query 6425 CCGAC 6429 | ||| Sbjct 56 CGGAC 52 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 222171245817352