Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_023742.1 Length=68711 Score E Sequences producing significant alignments: (Bits) Value seq133315 260 6e-65 seq539 167 1e-36 seq70437 131 7e-26 >seq133315 Length=1321 Score = 260 bits (288), Expect = 6e-65 Identities = 525/769 (68%), Gaps = 20/769 (3%) Strand=Plus/Minus Query 16396 CGTGCCACCAAGGTCAACTCTTGCGGGCTGCCGATCAGCGGTCCCGCCAACCGGATCGTG 16455 || ||||||||||||||| ||||||||| || || || ||| |||| ||| || Sbjct 987 CGCGCCACCAAGGTCAACAGTTGCGGGCTCCCCGTCGAGGGCGCCGGCAACT--ATC-TG 931 Query 16456 ACT---GACGGCTTCGTCACCTTCAACATCGACCCGGTGCTCAAGGACGCGGAGGAGCTG 16512 || ||||| ||||| | ||||| || ||| | ||||||||| | ||| | Sbjct 930 ACCACCGACGGTTTCGTGTCGTTCAAAATGTCCCCCAACATGAAGGACGCGAACGAGATC 871 Query 16513 TCGCAGACCAACGCGGCCGGTAAGGAATGCGTCACCGACCGCACTCCGCCGGAGCGGAAG 16572 |||| |||||| || ||| ||| ||||||||||||| ||||| ||||| ||| Sbjct 870 GAGCAGGAGAACGCGCAGGGACAGGTGTGCATCACCGACCGCACCCCGCCCGAGCGCAAG 811 Query 16573 TGGTACAACATCCAGGCCGAACTCTGCGGTGTCAACACCGGCCTGATCACCCTGCTCAAC 16632 |||||| || || || | || ||||| || ||| ||| ||||||||| |||||||| Sbjct 810 TGGTACGACCTCGAGCTGGCCCTGTGCGGGGTGAACTCCGAGCTGATCACCATGCTCAAC 751 Query 16633 GGGTGGCCGCAGATCCTCGACTACGACGACAACCCGATCGGTTTCCGCGACCAGAAGGAA 16692 | |||| |||| |||||||| | | | || || |||| ||||||||||||||| Sbjct 750 GCGTGGAAGCAGGAAGTCGACTACAAGGGCGACTCGGTCGGCTTCCGCGACCAGAAGCGC 691 Query 16693 GTGGACGACCAGTTCGGCGTCGCCTTCGAGGTCTGGACCGGCGGCAAGTCGGACGACGAC 16752 || || | | ||| || ||| | || ||||||||||||||||| | |||||||| Sbjct 690 GTCGAATCGGACTACGGTGTGGCCCTGGAAATCTGGACCGGCGGCAAGGCCGACGACGAT 631 Query 16753 TGCCCGACCCCGACCTCGGACTCGATCTTCTCGGCTC--CGTCGTCCGGCCTCCAGTACG 16810 ||||| ||||| || ||| |||| || ||| | | |||||||| |||| | Sbjct 630 TGCCCCACCCCCAC--CGGCGACGATATTTTCGCCACGAGCACGTCCGGCAAAAAGTATG 573 Query 16811 GCTACTTCCTGATCGCGGGCAAGGAATTCACGCTCGGCGCGATCAATATCGGCGCGCAGG 16870 | ||| | |||| ||||| || ||||||||||||| || | | ||| | | Sbjct 572 GGTACCTGCTGACGTGGGGCACCGAGTTCACGCTCGGCGACATTGAGGTACAGGCGGACG 513 Query 16871 TGTCGACGTTCACGCTGTCCGGAATCTCGATCGCCATCCCGCATTGGGGACGGGGTCCGT 16930 | | | ||||| || || || ||| ||||| |||||| ||||| || || |||| Sbjct 512 TCGCCAACTTCACCCTCTCGGGCATCAGCATCGCTGGCCCGCAGTGGGGTCGTGGCCCGT 453 Query 16931 ACAACGTCGCCGCCACCGACGCGTCCGGCACTCCCGGCCGTCTGCTGGAGCCGATGGACG 16990 || || | ||||| ||| | | ||| | ||||||||| | || ||| | Sbjct 452 GGAATGTTGTCGCCATCGATGACGACAACACGGCTGGCCGTCTGATCACTCCTCCGGATG 393 Query 16991 AGGACTCTCACTTCGCGGTGTTCCGTACGCCGGTCGCGCCGCCCGAGGTCACCAACGGCG 17050 | ||| || ||| || || || ||| |||||||||| || ||| || || | Sbjct 392 ATGACCAGCATTTCATTCTGCAGCGCACCCCGATCGCGCCGCCGGA-GTCGACACCGTCC 334 Query 17051 GCGAGCCTCTGC-CGCTGGACATCCTCGGGAAGTTCGTCGCGCCGAACTACTACTTCGGC 17109 || |||| |||||||||| ||| | |||| | ||| ||| ||||||||| Sbjct 333 GC------CTGCGAGCTGGACATCACCGGCACGTTCCAGGATCCGGACTTCTACTTCGGT 280 Query 17110 GGATCCGGCGG-CGAACCGGCTGCGGACGTGGCACCGGACCAGGACGAG 17157 || |||| || | ||||||||| || ||||| ||||| ||| |||| Sbjct 279 GG-GCCGGAGGATGCACCGGCTGCTGATGTGGCGCCGGATCAGCCCGAG 232 >seq539 Length=1209 Score = 167 bits (184), Expect = 1e-36 Identities = 327/478 (68%), Gaps = 13/478 (3%) Strand=Plus/Minus Query 9877 TGTTCTCGGATCCCAAGCTGACCGAGCCGACGCGCTCCA-CCATGGATCCCGAGACCGGA 9935 ||||| |||||| ||| |||| ||||| | | | | |||| || ||||| || Sbjct 1077 TGTTCGAGGATCCTGGGCTCACCGCACCGACCC-CGCTATCCATCGACTCCGAG---GGC 1022 Query 9936 CGGATCTACGGGCACATCGCGTGCTTCGGCGCGTGCCACCGGTCGATCCAGGCCCAGTGC 9995 || ||| ||| ||| |||| |||||||| || ||||| | | || | ||||||| Sbjct 1021 CGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCATGTGGGGTTCACCGACCAGTGC 962 Query 9996 CTCATGGCTCCGAAGTCGCCGACGAACTACTCGCAGTTCCTCACGTCGCCGCCGGTCCTG 10055 | ||| || | || | ||| |||| | || |||| ||| | || ||||| || Sbjct 961 GTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCACACCGCCCCACCGGTGATG 902 Query 10056 CTCGACAATGGCGAACGGCTCCCCGTCGGACGNNNNNNNNNNGGCACCGGTCACGCTCC- 10114 |||||||| || || || ||||||||||| | |||||||| || || Sbjct 901 CTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCATGCCGGG 842 Query 10115 -CGAGAACCTGTCCGGCGGTCCGGCCGTCGCGCACTACGACAACACCGGCACGTGCTTCG 10173 ||| | || ||| | | | |||| || |||||||||||||||||||| ||||||| Sbjct 841 TCGAAAGCCC--CCGCCCATGCTGCCGCAGCCCACTACGACAACACCGGCACCTGCTTCG 784 Query 10174 CGCTCGTCAACGTCGGCGAGGACGAACACGGGATCTGGTTCTCCGGCGTCGCGGCACCGT 10233 | |||||| || |||||| ||||||||||| |||||| | || ||||| || ||||| | Sbjct 783 CCCTCGTCCGCGCCGGCGAAGACGAACACGGCATCTGGGTGTCGGGCGTGGCCGCACC-T 725 Query 10234 GGGCC--ACGCCGGAGCAGATCGAGATGGGCCTCTCCGCACCCCTGTCGGGCGACTGGCG 10291 || | || || | | | || || ||| | |||||| |||| || || ||||| Sbjct 724 GGCACTGACAGCGAAAC-CCTGCAGGCCGGGCTCGCGGCACCCTTGTCCGGGGATTGGCG 666 Query 10292 GGACTTCGGTCACGGCCTCGACCTGGTGGCGGCGCTCGCCGTGAACACGCCCGGTTTC 10349 | | |||| | | | || || || || || ||||| |||||||| || |||||| Sbjct 665 GCAGATCGGCGGCAACTTGGAGCTCGTCGCCGCCCTCGCGGTGAACACACCGGGTTTC 608 >seq70437 Length=1356 Score = 131 bits (144), Expect = 7e-26 Identities = 189/267 (71%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 9332 CCGGACGTTCACGAACGCCACGCTCGCGATCCTCGGTACGCCGACCAGCGACGGCCGGAT 9391 |||||||||||| ||||||| |||| | ||||| || | ||| |||||| || || Sbjct 456 CCGGACGTTCACCGACGCCACCGTCGCACTACTCGGCACCTCCACCGACGACGGGCGCAT 397 Query 9392 GCTCGACAAGGACATCAAGCTCTCGTTCCGCGACTTCCCTCTGCCGGTCATGTGGTGCAA 9451 ||||| ||||||| | || | |||||| |||||| |||||| | |||||| || Sbjct 396 GCTCGCATCGGACATCGACGTCACCTTCCGCAGCTTCCCCCTGCCGCTGATGTGGGTGAA 337 Query 9452 GCAGACGACCGGCGGGCACACCGATGCGTACACCGTCGGCGTGCTGGAATCCGCCGAGGT 9511 |||||| | ||| ||| | | || ||||| |||||||| | ||| |||| || Sbjct 336 GCAGACCGGCTTCGGACACGACAACGCCTACACGGTCGGCGTCATCGAAGCCGCACGTGT 277 Query 9512 CAAGGGCAACAAGGTCAAGGGGTCCGGCTACCTGCTCAACACCGCCGAGGCCGACGAGGC 9571 | | ||| || || | |||||| || ||||||||||| | |||||| ||||||| Sbjct 276 CGACGGCGACGCCATCCTCGCGTCCGGTTATCTGCTCAACACGGACGAGGCGAACGAGGC 217 Query 9572 GGCAGAGCAGCTTGCCCATGGTGTCAC 9598 || || ||| | | || || ||||| Sbjct 216 TGCCGACCAGATCGAGCACGGCGTCAC 190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 219202663612672