Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_024145.1 Length=70667 Score E Sequences producing significant alignments: (Bits) Value seq539 120 1e-22 seq70437 84.2 1e-11 >seq539 Length=1209 Score = 120 bits (132), Expect = 1e-22 Identities = 319/469 (68%), Gaps = 29/469 (6%) Strand=Plus/Minus Query 7000 CTCACCGAGCCGACCGAG--ATCCAGATGGACCCCGAGACCGGTCGGATCTTCGGCCACC 7057 ||||||| |||||| | ||||| | ||| ||||| || || ||| ||| |||| Sbjct 1060 CTCACCGCACCGACCCCGCTATCCA--TCGACTCCGAG---GGCCGCATCAGCGGACACC 1006 Query 7058 TGGCCTGCTTTGGCAGCTGCCACCGGTCGCTCCAGGCTCAGTGCGTGATGGCTCCCAAGA 7117 | || ||||| || ||||| | | || | |||||||| ||| ||| | Sbjct 1005 TCGCATGCTTCGGGGCATGCCATGTGGGGTTCACCGACCAGTGCGTTCAGGCACCCCACT 946 Query 7118 GCCCGTCGAACTACTCGCAGTTCCACACCAGCCCGAGCG-TGCGGCTGGACGACGG-GAC 7175 || | | |||| | || ||||||||| |||| | || || ||| ||| |||| ||| Sbjct 945 CCCAGACCGGCTACGCCCACTTCCACACC-GCCCCACCGGTGATGCTCGACAACGGTGAC 887 Query 7176 GCGCCTGGCCGTCGGTCGGCTCACGGTCGGCACCGGCCACGC--GGACGAGCGCCTGGGC 7233 || || ||||||| ||||||| || |||||||| || || || ||| ||| || Sbjct 886 -CGTCTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCATGCCGGGTCGAAAGCCCCCGC 828 Query 7234 GGC-GCGGCGGCGATGAGCC-ACTACGACAACACCGGCACGTGCTTCGCGCTGGTCCGCG 7291 || || || |||| ||||||||||||||||||| |||||||| || ||||||| Sbjct 827 CCATGCTGCCGC----AGCCCACTACGACAACACCGGCACCTGCTTCGCCCTCGTCCGCG 772 Query 7292 CCTACGA-GACCCCCATCGGCATCGAGGTCTCGGGCGTGGCTGCGCCCTGGGCCACCGCC 7350 || ||| ||| || ||||||| ||| ||||||||||| || ||||| ||| | | Sbjct 771 CCGGCGAAGACGAACA-CGGCATCTGGGTGTCGGGCGTGGCCGC-ACCTGG--CACTGAC 716 Query 7351 GAGCAGA----TCGAGATGGGCCTGGCCGCGCCGCTGTCCGGCGACTGGCGCGACTTCGG 7406 ||| | | || || || || || || ||||||| || ||||| | |||| Sbjct 715 -AGCGAAACCCTGCAGGCCGGGCTCGCGGCACCCTTGTCCGGGGATTGGCGGCAGATCGG 657 Query 7407 TCAGGGCCTGGACCTGATCGCCGCCCTGGCCGTCAACACGCCCGGCTTC 7455 | |||| || |||||||||| || || ||||| || || ||| Sbjct 656 CGGCAACTTGGAGCTCGTCGCCGCCCTCGCGGTGAACACACCGGGTTTC 608 >seq70437 Length=1356 Score = 84.2 bits (92), Expect = 1e-11 Identities = 120/169 (71%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 6486 CGACGGTCGGATGCTGAGCCCAGACATCGACCTGACCGTGCGCCAGACGCCGCTGCCGGT 6545 |||||| || ||||| | ||||||||| | ||| | ||| || |||||| | Sbjct 408 CGACGGGCGCATGCTCGCATCGGACATCGACGTCACCTTCCGCAGCTTCCCCCTGCCGCT 349 Query 6546 CATGTGGTGCCAGCAGACCAACTACGGCCACATGGACGCGTACACGGTCGGCGTCACCGA 6605 |||||| |||||||| || ||| ||| |||| |||||||||||||||| ||| Sbjct 348 GATGTGGGTGAAGCAGACCGGCTTCGGACACGACAACGCCTACACGGTCGGCGTCATCGA 289 Query 6606 GGCCGCGCGCCTGGAGGGCGACCGCATCCTGGCCTCGGGGTACATGCTC 6654 ||||| || | || |||||| |||||| || || || || ||||| Sbjct 288 AGCCGCACGTGTCGACGGCGACGCCATCCTCGCGTCCGGTTATCTGCTC 240 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 225446262314128