Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_024363.1 Length=68807 Score E Sequences producing significant alignments: (Bits) Value seq539 123 1e-23 >seq539 Length=1209 Score = 123 bits (136), Expect = 1e-23 Identities = 223/318 (70%), Gaps = 11/318 (3%) Strand=Plus/Minus Query 8191 ATGGACCCCGACACGGGCCGGATATTCGGACACATCGCGTGCTTTGGTGCGTGCCACCGC 8250 || ||| |||| |||||| || ||||||| |||| ||||| || || ||||| | Sbjct 1036 ATCGACTCCGA---GGGCCGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCAT-GT 981 Query 8251 TCGGTGCAGAATGC-GTGCGTCATGGCCCCGAAATCGCCGTCGAACTACGCGCAGTTCCA 8309 ||| || | |||||| ||| || | || | | | |||||| || ||||| Sbjct 980 GGGGTTCACCGACCAGTGCGTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCA 921 Query 8310 CACCTCGCCGCCTGTGCTGCTCGATGACGGCACCCGACTCGCCGTGGGCCGCCTGACCGT 8369 |||| | || || ||| ||||||| |||| ||| ||| |||| ||| | || ||||| Sbjct 920 CACCGCCCCACCGGTGATGCTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGT 861 Query 8370 CGGCACCGGGCATGCC--GACGAGCGGCTGCGTCCCGGCCCGGCCATGGCGCACTACGAC 8427 ||||||||||||||| | ||| | | || || | | ||| || ||||||||| Sbjct 860 GGGCACCGGGCATGCCGGGTCGAAAGCCCCCGCCCATG--CTGCCGCAGCCCACTACGAC 803 Query 8428 AACACCGGCGCGTGCTGGGCGCTGGTGCGTGCCTACG-AGACCAGCGTCGGAATCGAGGT 8486 ||||||||| | |||| || || || || ||| || |||| | | ||| ||| ||| Sbjct 802 AACACCGGCACCTGCTTCGCCCTCGTCCGCGCCGGCGAAGACGAAC-ACGGCATCTGGGT 744 Query 8487 GTCGGGCGTGGCCGCCCC 8504 ||||||||||||||| || Sbjct 743 GTCGGGCGTGGCCGCACC 726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 219509097904768