Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq112114 152 5e-32 seq1065 125 7e-24 seq20354 105 6e-18 >seq112114 Length=2115 Score = 152 bits (168), Expect = 5e-32 Identities = 157/203 (77%), Gaps = 2/203 (1%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521 ||||||||| ||||| || ||||| ||| || ||| | | | || ||||||||||||| Sbjct 1721 GGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCA-TCTTCGAGCTGCTTGC 1663 Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581 | ||| | || || || ||||||||||| ||||| || |||||||| ||||| || Sbjct 1662 CGGCGAAGATCAGACGTTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGAATCTTGGCCT 1603 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | |||| ||||||| | |||||||| |||| |||| |||||| |||||||| | Sbjct 1602 TCACGTTTTCAATCGTGTCGCTCGGCTCCACCTCGAGCGTGATGGTTTTCCCGGTCAGGG 1543 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 |||| ||||| ||||||||| || Sbjct 1542 TTTTGACGAAGATCTGCATGACT 1520 Score = 125 bits (138), Expect = 7e-24 Identities = 149/202 (74%), Gaps = 0/202 (0%) Strand=Plus/Minus Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTGGACGAGTCCTCGAGCTGCTTGCC 133522 ||||||||||||||| || ||||| || || ||| ||||||||| |||||||| Sbjct 1949 GGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTGCGGCCGTCCTCGAGTTGCTTGCC 1890 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | ||||| |||||||| || || || || ||||||||||| ||| || ||| Sbjct 1889 GGCGAAGATGAGACGCTGCTGATCCGGGGGAATCCCTTCCTTGTCCTGGATTTTGGCCTT 1830 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | || | |||||| | ||||| || |||| |||| || ||||| || || || Sbjct 1829 GACGTTTTCGATGGTGTCGCTCGGCTCAACCTCGAGCGTGATCGTCTTGCCAGTGAGGGT 1770 Query 133643 TTTTACGAAAATCTGCATGGCT 133664 || ||||| ||||||||| || Sbjct 1769 CTTGACGAAGATCTGCATGCCT 1748 Score = 98.7 bits (108), Expect = 1e-15 Identities = 103/133 (77%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CTTGAGCTG 133588 || || |||||||| |||||||| || ||||||||||| ||| ||| | ||| | | Sbjct 2110 ATCAGACGCTGCTGATCGGGAGGAATACCTTCCTTGTC-CTGAATTTTCGCCTTCACGTT 2052 Query 133589 CTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTAC 133648 ||| | |||||| |||||||||| || | |||| || |||||||| || ||||| || Sbjct 2051 CTCGATCGTGTCACTGGGCTCCACCTCCAGTGTGATTGTCTTGCCGGTGAGGGTTTTGAC 1992 Query 133649 GAAAATCTGCATG 133661 ||| ||||||||| Sbjct 1991 GAAGATCTGCATG 1979 >seq1065 Length=2691 Score = 125 bits (138), Expect = 7e-24 Identities = 151/204 (74%), Gaps = 6/204 (3%) Strand=Plus/Minus Query 148850 CTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGATCACGCC 148909 ||| ||||| || ||||||| |||| ||||| |||||| |||||||| ||||| ||| Sbjct 1088 CTCGTCCGGCGCAGTGTACTCGACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCC 1029 Query 148910 CACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACGGTCCGCC 148969 | |||||| || ||| |||||||||||| || |||||||||||||||||||| ||| Sbjct 1028 GAGGTTCTTCTGGTTGGACTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTGCC 969 Query 148970 AGTTTCCACCTGCGTTTCCACTAT---GAACCGATGCAGGTCCTGCGCGCGCACTTGCTG 149026 || || | ||||| |||| || | ||| ||| | |||||| |||| || | Sbjct 968 CGTCTCTATCTGCGACTCCAGGATGGCGTACC---ACAGCTGCTGCGCCTGCACCTGGCG 912 Query 149027 CTCGTAGCGACCCTCCTGCTCGTA 149050 | |||||| |||| |||||| Sbjct 911 CCGGTAGCGCTTCTCCCCCTCGTA 888 Score = 84.2 bits (92), Expect = 2e-11 Identities = 105/144 (73%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 149055 GTATACAGCCGCTCGAACGCCTCGCCGTAGCAATCGTCGAGACCGGGGCACTTGTGCGGG 149114 || || |||| ||| || |||| |||||| || | || |||||||||| ||| ||| Sbjct 243 GTGTAGAGCCTCTCAAATTCCTCTCCGTAGACCTCTTGCAGGCCGGGGCACTCGTGGGGG 184 Query 149115 CACATGAGCGACCACACGCCGTCCGCGTACACGCGCTTCATAAACAGATCGGGCACCCAG 149174 |||||||| ||||||| |||| | ||| ||| ||| |||| || || | |||| Sbjct 183 CACATGAGGGACCACATCTGGTCCTGCTCCACCCGCCGCATGAACAAGTCCGGGATCCAG 124 Query 149175 AGCGCGTACATGAGGTCGCGCGCC 149198 || |||| | |||||| |||||| Sbjct 123 AGGCCGTAGAAGAGGTCCCGCGCC 100 >seq20354 Length=4240 Score = 105 bits (116), Expect = 6e-18 Identities = 157/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 120665 CCTCGTCGCGCGATATCAGCTCGTTGCTAAACGTCAGGCCGGGCATGATGCCTTTCGTCT 120724 ||||||| || || ||||||||||| || || ||||||||||||| || | ||| Sbjct 1547 CCTCGTCTCGACTGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCT 1488 Query 120725 TGATGTAGAATATGGCGGCAAAGCTGCCCGAAAAGAACACGCCCTCCACGATGGCAAAGG 120784 | | |||| |||| ||||| ||||| ||||| | |||||| ||| ||||| | Sbjct 1487 TCAGCCAGAAGATGGACGCAAACGATCCCGAGAAGAAGATGCCCTCGACGGCCGCAAACG 1428 Query 120785 CGACCATGCGCTCGGCCAACGTCGCCGTCTTGCTGTCGATCCACTTCATGGCCCACTCGG 120844 |||| ||||||||| | || || || || | || ||||||| |||| ||||| || | Sbjct 1427 CGACGATGCGCTCGCCAAATGTGGCGCTCCGGTTGCCGATCCAGTTCAGTGCCCAGTCTG 1368 Query 120845 CCTTTTTGCGCACGCACGGCATCCGCTCGAACGCGTTCAGCAG 120887 | || | | ||| |||||| ||| | ||||| | ||| Sbjct 1367 CTTTCCTCTTAATGCAGGGCATCGTCTCAACGGCGTTGAACAG 1325 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 482184958895840