Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq112114 102 5e-17 >seq112114 Length=2115 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | |||| || || ||| |||||| || |||||||| || || Sbjct 1978 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAC 1919 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| |||| || | ||| || ||||| || || | |||||||||||| | || Sbjct 1918 AGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGA 1859 Query 33643 ACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCAC 33701 | ||||| ||||| ||||| | | || | || | ||||||||| | || || Sbjct 1858 ATCCCTTCCTTGTCCTGGATTTT-GGCCTTGACGTTTTCGATGGTGTCGCTCGGCTCAAC 1800 Query 33702 GTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || | ||||||||| || || || | || || || ||||||||||| Sbjct 1799 CTCGAGCGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 1752 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 33541 ACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAGAGTGTGCGTTCGTCGTCC 33600 |||| || || ||| ||| || || |||||||| ||||| | ||||| | || || Sbjct 1732 ACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCTTCG 1673 Query 33601 AATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGCACACCTTCTTTGTCGGCA 33660 | || || ||||| || |||| ||| ||||| || |||| | || || ||||| | Sbjct 1672 AGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGGATCCCCTCCTTGTCCTGA 1613 Query 33661 ATTTTCTGTTTCAACATAGTCACG-GTGTCGCTTGATTCCACGTCAACCGTGATCGTTTT 33719 || || |||| | | ||| |||||||| | ||||| || | |||||| ||||| Sbjct 1612 ATCTTGGCCTTCA-CGTTTTCAATCGTGTCGCTCGGCTCCACCTCGAGCGTGATGGTTTT 1554 Query 33720 ACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || || | ||||| || ||||||||||| Sbjct 1553 CCCGGTCAGGGTTTTGACGAAGATCTGCAT 1524 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 327884692542720