Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_026421.1 Length=182380 Score E Sequences producing significant alignments: (Bits) Value seq55823 132 6e-26 seq116231 116 4e-21 >seq55823 Length=3224 Score = 132 bits (146), Expect = 6e-26 Identities = 111/135 (82%), Gaps = 6/135 (4%) Strand=Plus/Minus Query 146926 TCCACGTGGTTGAGGTAGACGTGCGCGTCCCCCAGGGTGTGCACAAAGTCCCCCGG---C 146982 |||||||||||||| |||| ||| |||||||||||||| || ||||||||||| || | Sbjct 1946 TCCACGTGGTTGAGATAGATGTGGGCGTCCCCCAGGGTATGTACAAAGTCCCCGGGTCGC 1887 Query 146983 TTAAGGCCGGTCACGTGGGCCACCATGTAGGTGAGCAGCGAGTAGCTGGCTATGTTGAAG 147042 || |||||||| | ||||||||||| ||| || || | ||||||||| |||||||| Sbjct 1886 TTC---CCGGTCACCTTGGCCACCATGTGGGTCAGGAGGGCGTAGCTGGCGATGTTGAAA 1830 Query 147043 GGGACCCCCAGGCCC 147057 || || ||||||||| Sbjct 1829 GGCACGCCCAGGCCC 1815 >seq116231 Length=1062 Score = 116 bits (128), Expect = 4e-21 Identities = 118/153 (77%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 147360 GAGAAACTCGGGGGACCCGTGGGCGTCCCAGATGCCCACTCCCTTGGCGGAGAGCTCCTT 147419 |||||||| | |||| |||| | |||||||||||| || || |||| |||||||| Sbjct 733 GAGAAACTGGCGGGAGCCGTTGCCGTCCCAGATGCGAACGCCACGCTCGGACAGCTCCTT 674 Query 147420 AGAGTCCGTGGAGCCCCGGATGAACCAGAGCAGCTCCTCCAAAACCCCCCTCCAAAAGAC 147479 || || || ||||| | ||||||||||||||| |||| |||||| | ||| ||||| Sbjct 673 GCCGTTGGTTGACCCCCGAAGGAACCAGAGCAGCTCTTCCACAACCCCTCGCCAGAAGAC 614 Query 147480 CCTCTTGGTGGTCAGCAGGGGGAACTGGTCCCT 147512 || ||| || ||||||||||| | |||| ||| Sbjct 613 CCGCTTCGTCGTCAGCAGGGGCA--TGGTTCCT 583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581996342102400