Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq133391 163 4e-34 seq116809 138 2e-26 seq137924 136 6e-26 seq31908 136 6e-26 seq20354 136 6e-26 seq27636 98.7 1e-14 seq155366 86.0 9e-11 seq1065 86.0 9e-11 >seq133391 Length=2029 Score = 163 bits (180), Expect = 4e-34 Identities = 286/414 (69%), Gaps = 2/414 (0%) Strand=Plus/Minus Query 332921 GACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATGGTCGACCGG 332980 |||||||||||||||||||| |||| |||||| || | | ||||||| || || Sbjct 732 GACGTGTTGCAGGCCAGGGCGAACCTCGTCGTCTTTGAGTAGATTTCCATAGTACGGCGC 673 Query 332981 AGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATGATCTTGTG- 333039 || |||||||| || | || | || ||| || |||||||||||||||| |||||| Sbjct 672 AGAGCCTGTTGTGCTCCTTCTGTCATGCTGTCCGCTTCGTCGAGGATGATGACCTTGTGT 613 Query 333040 GCGCCCGTGCGGCAGATCAACCCTTTTCGAGGCGTGGTGTTTGATGATCTTGCGCACGAC 333099 ||||| | || ||| ||| ||||| ||| ||||| | ||||| ||||| Sbjct 612 TTGCCCG-GTGGAAGAGTTACCTTTTTCTGCGCGAACATCTTGATTTTGTTGCGAACGAC 554 Query 333100 GTCCACGCCGCGCTCGTCCGACGCGTTGAGTTCGAGCACGGCCTCGTCGGCGGCCGCACC 333159 ||| | ||| | |||| ||| |||||||||||||| ||||| ||| | | | || Sbjct 553 GTCGATGCCTCTGTCGTTCGAGGCGTTGAGTTCGAGGACGGCGTCGCGGAACGAAGGGCC 494 Query 333160 CAAGAGGACGCGCGCCAGGCACGCGATGCTCGTGGTCTTGCCCGTGCCGGGCGGACCCGC 333219 | || | | || ||||||| |||| | ||||| |||||| ||||| || |||| Sbjct 493 GAGAAGAATCCTCGACAGGCACAGGATGGTGGTGGTTTTGCCCACTCCGGGAGGGCCCGA 434 Query 333220 CAGCAAGAGGTTGGGCATGTTGCCGTCGGCGGCCAGCGCCTTGAGGTAGGCAACGGCGTG 333279 || | || ||| || | |||||| ||| || | | | | ||| ||| | || | Sbjct 433 AAGGATGACGTTCGGGACGTTGCCCTCGCGGGAAAACACTTCGAGTCGGGCTATGGTCTC 374 Query 333280 CTCGTTGCCGACAATGTCGTCGAGCACCATTGGGCGGTACTTTTCGATCCATGG 333333 |||||||| || || |||| || | || ||||||||||||| ||| || Sbjct 373 TTCGTTGCCCACGATCTCGTTGAATTTCGCCGGACGGTACTTTTCGACCCAGGG 320 >seq116809 Length=7987 Score = 138 bits (152), Expect = 2e-26 Identities = 172/234 (74%), Gaps = 10/234 (4%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||| || ||||| ||||| || |||| | ||||| ||| || Sbjct 5337 ATCTACAAGGTCCTGAAGCAAGTGCATCCGGACACCGGCGT------CTCCAGCAAAGCC 5390 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||| ||||||||| |||||||||||||| |||| | |||| ||||||| || Sbjct 5391 ATGTCCATCATGAACAGCTTTGTCAACGACATCTTCGAGAGGATCGCAGCCGAGGC--GT 5448 Query 725031 CGC--CTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCG 725088 ||| ||||| | || ||||||||| ||| ||| || || ||| |||||||||||| Sbjct 5449 CGCGTCTGGCCCACTACAACAAGCGTTCCACCATCACCAGCCGGGAGGTCCAGACCGCCG 5508 Query 725089 TGCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || || | ||| || ||||| |||| |||||| ||||||||||| |||| Sbjct 5509 TTCGTTTGCTGCTGCCAGGTGAACTTGCCAAGCACGCAGTCTCCGAGGGGACCA 5562 >seq137924 Length=19151 Score = 136 bits (150), Expect = 6e-26 Identities = 172/233 (74%), Gaps = 10/233 (4%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||||||||| ||||| |||||| |||| | | |||| |||| || Sbjct 14258 ATCTACAAGGTGCTCAAACAGGTCCACCCCG--ACCGGAGTG------TCCAGCAAGGCC 14309 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGG- 725029 ||||||||||||||| || || |||||||| |||| ||||||| || |||| | Sbjct 14310 ATGTCGATCATGAACAGCTTCGTGAACGACATCTTCGAGCGCATCG-CAGCGAGTCGTCC 14368 Query 725030 TCGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGT 725089 ||| ||||| | || |||||||||| || ||| | || ||||||||||| || || Sbjct 14369 TCGGCTGGCTCACTACAACAAGCGCTCGACCATCACGAGTCGGGAGATCCAGACAGCTGT 14428 Query 725090 GCGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | | || | ||| || |||||||| | ||| || || ||||||||||||| Sbjct 14429 GAGGCTCCTGCTGCCGGGTGAACTGGCAAAGCATGCAGTGTCCGAGGGCACCA 14481 >seq31908 Length=9191 Score = 136 bits (150), Expect = 6e-26 Identities = 169/232 (73%), Gaps = 6/232 (3%) Strand=Plus/Plus Query 724911 ATCTACAAGGTGCTCAAGCAGGTGCACCCCCGAACCGTTGGGCCATCCTCCAACAAGTCC 724970 ||||||||||||||||| ||||| |||||| |||| | | |||| |||| || Sbjct 977 ATCTACAAGGTGCTCAAACAGGTCCACCCCGATACCGGAGTG------TCCAGCAAGGCC 1030 Query 724971 ATGTCGATCATGAACTCGTTTGTCAACGACATGATCGACCGCATCGGCACCGAGGCCGGT 725030 ||||||||||||||| || || |||||||| |||| ||||||| | ||| | Sbjct 1031 ATGTCGATCATGAACAGCTTCGTGAACGACATCTTCGAGCGCATCGCAGCAGAGTCGTCC 1090 Query 725031 CGCCTGGCGCGCTCCAACAAGCGCAACACGATCGGCACGCGCGAGATCCAGACCGCCGTG 725090 || ||||| | || |||||||||| || ||| | || ||||||||||| || ||| Sbjct 1091 CGGCTGGCTCACTACAACAAGCGCTCGACCATCACGAGTCGGGAGATCCAGACAGCTGTG 1150 Query 725091 CGCCTGATCATGCGCGGCGAACTGGCCAGGCACGCCGTCTCCGAGGGCACCA 725142 | || | ||| || |||||||| | ||| || || ||||||||||||| Sbjct 1151 AGGCTCCTGCTGCCGGGTGAACTGGCAAAGCATGCGGTGTCCGAGGGCACCA 1202 >seq20354 Length=4240 Score = 136 bits (150), Expect = 6e-26 Identities = 181/243 (74%), Gaps = 10/243 (4%) Strand=Plus/Plus Query 1456074 CGAGAAGGACCACCTCTTTCGCGCCATCGACACGGTGCCGTCGGTGAGGAAAAAGGCCGA 1456133 ||| | ||||| || || |||| | || ||| |||| | | | || || || || Sbjct 1312 CGACAGGGACCGTCTGTTCAACGCCGTTGAGACGATGCCCTGCATTAAGAGGAAAGCAGA 1371 Query 1456134 CTGGGCGATGAAGTGGATCAACAA--GGAGGGCCTCGACACTTTGCCGAGCGGCTCGTCG 1456191 |||||| |||| |||||| ||| |||| ||| ||| |||| |||||| |||||| Sbjct 1372 CTGGGCACTGAACTGGATCGGCAACCGGAGCGCC---ACA-TTTGGCGAGCGCATCGTCG 1427 Query 1456192 GCTTTGCCGC-GTCGAGGGCATCTTTTTCTCGGGCAGTTTCTGCG-CCATCTTTTGGCTC 1456249 ||||| || |||||||||||||| |||||||| || |||| ||||||| ||||| Sbjct 1428 CGTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGATCGTT-TGCGTCCATCTTCTGGCTG 1486 Query 1456250 AAGAAGCGCGGCCTCATGCCCGGTCTTCTGCTTTAGCAACGAATTTATCAGTCGCGACGA 1456309 |||||||| || ||||||||||| | || ||| |||||||| | |||||||| ||||| Sbjct 1487 AAGAAGCGGGGACTCATGCCCGG-CCTCACCTTCAGCAACGAGCTCATCAGTCGAGACGA 1545 Query 1456310 AGT 1456312 || Sbjct 1546 GGT 1548 Score = 89.7 bits (98), Expect = 7e-12 Identities = 152/214 (71%), Gaps = 6/214 (3%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGA-C 1456510 ||||| ||||| |||||||| | | || || || |||||||| || || | Sbjct 2065 TGCACACCGACTTCGCCTGTCTCATGTTCAGTCATCTTGTGAACAAGCCATCTCAAGAGC 2124 Query 1456511 GTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCG 1456570 ||| | | ||||||||| ||| || |||| || ||| | ||||| | | ||| | Sbjct 2125 GTGTGCGA-CAGATCATCTGCGACGCTGTCGTCATTGAGCAGGAGTTCCTGACCGATGCT 2183 Query 1456571 CTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATTTT 1456629 || |||||||| || |||||||||||| || | ||| ||| | ||||| | | ||| Sbjct 2184 CTTCCGGTGGCCCTGATCGGCATGAACTGCGA--GCTGATGAAGCGCTACATCG-AGTTT 2240 Query 1456630 GTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCG 1456663 ||||||||||| ||||| | || ||| ||||||| Sbjct 2241 GTCGCCGACCGTCTGCTTGTGGAGCTTGGCTGCG 2274 >seq27636 Length=5387 Score = 98.7 bits (108), Expect = 1e-14 Identities = 128/177 (72%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 1818067 CCATGGTAAAGGGCGTCACGCGCTCGGGAAAGGTGAGCGTCTTGACGATCTCATAGGGCA 1818126 ||||| | || || || ||| |||||| |||||||| ||| | |||| ||||| Sbjct 489 CCATGTTGAATGGGGTGACGATCTCGGGGAAGGTGAGGTTCTGGGCGATAGAGCGGGGCA 430 Query 1818127 CGCCCACCTCGTCAATGTCAATCTCGGGGTCGGGGCTGATGACGGCGCGCGCGGTAAAGT 1818186 |||| |||||| |||| | | |||||| || ||||||| | || |||| |||| Sbjct 429 CGCCGACCTCGCTAATGCGCAAATTGGGGTCTGGCGTGATGACCGTACGGGCGGAGAAGT 370 Query 1818187 TGACGCGCTTGCCCATGCAATTGCCGCGGATCCTGCCCTCCTTGCCCTTGAACCGCT 1818243 || ||||||||||| ||||| ||||| | ||||||||||| ||| | ||||| Sbjct 369 CCACACGCTTGCCCATTAGGTTGCCTCGGATGCGGCCCTCCTTGCTCTTCAGCCGCT 313 >seq155366 Length=2809 Score = 86.0 bits (94), Expect = 9e-11 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 259970 TGCTTTCTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAG 260029 ||||| ||| | | ||||||| ||| || ||||| ||||| ||||| || |||||| Sbjct 2500 TGCTTCCTGCTCCAAATGAAGGACGACAGTATAGAGGGAATCTACGACACCCTGAAGCAG 2559 Query 260030 TGCGCGCTCATCTCCAAGGCGGCCGGCGGCATCGG 260064 || ||||||||||||||| | |||||||| ||||| Sbjct 2560 TGTGCGCTCATCTCCAAGTCTGCCGGCGGAATCGG 2594 >seq1065 Length=2691 Score = 86.0 bits (94), Expect = 9e-11 Identities = 149/213 (70%), Gaps = 8/213 (4%) Strand=Plus/Plus Query 261821 TACCTGGAACCGTGGCACGCCGACCTCATCAACTGGCTGGACCTCAAAAAGAACCACGGC 261880 |||||||| |||||||| || ||| | | ||| |||||||| || ||||| ||| Sbjct 26 TACCTGGAGCCGTGGCATGCGGACGTGTTTGACTTCCTGGACCTGAAGAAGAATACAGGC 85 Query 261881 AAGGGAGGGGGAGAACCGGGCGCGCGCGATCTCTTTTACGGCCTGTGGACGTGCGACCTG 261940 |||| |||||| |||||||| | | ||||| |||||||| |||| ||| || Sbjct 86 AAGGA----GGAGAATCGGGCGCGGG--ACCTCTTCTACGGCCTCTGGATCCCGGACTTG 139 Query 261941 TTTATGCGCCGCATGGTGACCGGCCGCGAC-TGGTCGCTCTTTTGCCCGTCCGAGGCGCC 261999 || ||||| || ||| | | || | || ||||| ||| | ||||| |||| || Sbjct 140 TTCATGCGGCGGGTGGAG-CAGGACCAGATGTGGTCCCTCATGTGCCCCCACGAGTGCCC 198 Query 262000 CGGCCTGCACGAATGCTATGGCGCGGCCTTTGA 262032 ||||||||| || ||| || | || ||||| Sbjct 199 CGGCCTGCAAGAGGTCTACGGAGAGGAATTTGA 231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7158085255899592