Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq20354 91.5 2e-13 >seq20354 Length=4240 Score = 91.5 bits (100), Expect = 2e-13 Identities = 155/224 (69%), Gaps = 3/224 (1%) Strand=Plus/Minus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 |||| |||| ||| || | ||||| || ||||| || ||||| || || ||||| | Sbjct 1547 CCTCGTCTCGACTGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCT 1488 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || |||| ||||| ||||| || ||||||||||| || || || ||||| | Sbjct 1487 TCAGCCAGAAGATGGACGCAAACGATCCCGAGAAGAAGATGCCCTCGACGGCCGCAAACG 1428 Query 39759 CAACAAGTCTCTCTCCGTAACTTG---TATCATTATGTATCCACTTCTGTGCCCAATCAG 39815 | || | | ||| || | | | | || ||||| ||| ||||||| || | Sbjct 1427 CGACGATGCGCTCGCCAAATGTGGCGCTCCGGTTGCCGATCCAGTTCAGTGCCCAGTCTG 1368 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 ||||| |||| | || ||||| || || | || || || ||| Sbjct 1367 CTTTCCTCTTAATGCAGGGCATCGTCTCAACGGCGTTGAACAGA 1324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685152751998240