Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq149971 93.3 9e-14 >seq149971 Length=7677 Score = 93.3 bits (102), Expect = 9e-14 Identities = 175/253 (69%), Gaps = 6/253 (2%) Strand=Plus/Minus Query 48469 TAACTGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTATTAAAG 48528 ||| |||||| | |||| || ||||| || |||||||| | ||| ||||||| Sbjct 811 TAATTGCTGGCGCTAAATTCCAAGGTGAGTTTGAAGAACGATTAAAAGCGGTTATTAACC 752 Query 48529 AACTTAAAAAA-CGA--GAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGG 48585 || ||||||| | | | ||| | ||||| || ||||||||| ||||| | || | | Sbjct 751 AAATTAAAAATTCTAATGGAAAAATTATTTTATTTATTGATGAACTACATTTAATTGTTG 692 Query 48586 GTGCTGGTGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTT 48645 |||||||| | | || | || || |||||| ||| | | ||||| | Sbjct 691 GTGCTGGTAGAA-CACAA--GGTTCAATGGATGCTTCTAATTTACTAAAACCAATGTTAG 635 Query 48646 CACGTGGTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTG 48705 | |||||||| | ||| ||| ||||| ||||| ||| |||||||| || |||||| Sbjct 634 CGCGTGGTGAGCTACGTTGTATTGGTGCCACAACACTTGACGAATATCGTCAATACATTG 575 Query 48706 AAAAAGATGCTGC 48718 |||||||||| || Sbjct 574 AAAAAGATGCAGC 562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1106089231951484