Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq20354 96.9 1e-14 >seq20354 Length=4240 Score = 96.9 bits (106), Expect = 1e-14 Identities = 103/135 (76%), Gaps = 1/135 (1%) Strand=Plus/Plus Query 443705 CGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTTTAGCCT 443764 |||||| | ||||| ||||| | ||||| || | || || ||| | | || || | Sbjct 1414 CGAGCGCATCGTCGCGTTTGCGGCCGTCGAGGGCATCTTCTTCT-CGGGATCGTTTGCGT 1472 Query 443765 CCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACGAACTGA 443824 ||||||||||| |||| ||||| ||||| |||| ||| || ||||| || ||||| || | Sbjct 1473 CCATCTTCTGGCTGAAGAAGCGGGGACTCATGCCCGGCCTCACCTTCAGCAACGAGCTCA 1532 Query 443825 TCAGTCGGGACGAGG 443839 ||||||| ||||||| Sbjct 1533 TCAGTCGAGACGAGG 1547 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1584173985893620