Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq1065 95.1 1e-14 seq53522 87.8 2e-12 seq20354 84.2 3e-11 >seq1065 Length=2691 Score = 95.1 bits (104), Expect = 1e-14 Identities = 106/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 118750 CAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTT 118809 |||||||||| | | || ||||||| ||| | ||| |||||||| | |||||| | Sbjct 1077 CAGTGTACTCGACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCCGAGGTTCTTCT 1018 Query 118810 GATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTT 118869 | || ||||| |||| || ||||||||||| |||||||| || || |||||||| | | Sbjct 1017 GGTTGGACTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTGCCCGTCTCTATCT 958 Query 118870 GGGACTTGAGAATAGCCTTCCA 118891 | |||| || || || | ||| Sbjct 957 GCGACTCCAGGATGGCGTACCA 936 >seq53522 Length=4295 Score = 87.8 bits (96), Expect = 2e-12 Identities = 256/389 (66%), Gaps = 24/389 (6%) Strand=Plus/Minus Query 14051 ACGGTGATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATG 14110 |||| || | ||||||||| | ||| || || || | || ||||| | |||| Sbjct 1954 ACGGCAATTTGACGATCAAACCTACCGGGACGTAGTAATGCACGATCAAGAACATCAGGA 1895 Query 14111 CGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTA---TCAAAGCCATCCATCTCA 14167 ||||| || || || |||| || | ||| ||||| ||||| || ||||| || Sbjct 1894 CGGTTTGTAGCTGCAATGATCACAACTCCC---TCGTTTGCTTCAAATCCGTCCATTTCG 1838 Query 14168 GTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATT--CGCAGGC-ATACC---ACCC 14221 || | ||| || | |||||| || ||||||||||| ||| | | ||||| ||| Sbjct 1837 ACTAACATTTGGTTTAAGGTTTGCTCACGTTCATCATTGCCGCCGCCCATACCGATACCT 1778 Query 14222 GCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACATGGTTGATTT 14281 | ||| ||| || || |||||||||||||| || | ||||| || ||| Sbjct 1777 CTATGGCG------ACCTACCGCATCAATTTCATCGATAAAGATAATACAAGGAGCATT- 1725 Query 14282 TCACGGGCAAC---TTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATC 14338 ||| | | |||||| || | ||||| | | ||||||||||| |||||||| Sbjct 1724 --ACGTTTACCCTGTTCAAACATGTTACGCACACGGCTTGCACCGACACCTACAAACATT 1667 Query 14339 TCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCT 14398 || ||||||| | | |||| | | || || || |||| ||||| || || ||| Sbjct 1666 TCAACAAAATCAGAGCCGGATATGTTAAAAAACGGAACATTAGCCTCACCTGCAATTGCT 1607 Query 14399 CGGGCGAGGAGGGTCTTCCCCGTCCCTGG 14427 || || || ||||| || || || || Sbjct 1606 TTAGCAAGAAGTGTCTTACCGGTTCCAGG 1578 >seq20354 Length=4240 Score = 84.2 bits (92), Expect = 3e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||| || |||||| || || |||| || || |||||||| |||||||||| Sbjct 1547 CCTCGTCTCGACTGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCT 1488 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACG 130154 ||| |||||| || | ||| || || ||||||||||| ||||| || ||| |||| Sbjct 1487 TCAGCCAGAAGATGGACGCAAACGATCCCGAGAAGAAGATGCCCTCGACGGCCGCAAACG 1428 Query 130155 CAAAGAGACGCTCAGCAAA 130173 | | || ||||| |||| Sbjct 1427 CGACGATGCGCTCGCCAAA 1409 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 616854201332960