Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq20354 96.9 4e-15 seq53522 93.3 5e-14 >seq20354 Length=4240 Score = 96.9 bits (106), Expect = 4e-15 Identities = 107/140 (76%), Gaps = 2/140 (1%) Strand=Plus/Plus Query 94798 TTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTC 94857 |||| ||||| || |||| |||||| || ||||| ||||||||||| || || || Sbjct 1409 TTTGGCGAGCGCATCGTCGCGTTTGCGGCCGTCGAGGGCATCTTCTTCTCGGGATCGTT- 1467 Query 94858 TGCG-CTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGA 94916 |||| | || | ||||| |||||||| || |||||||| || ||| |||| |||||| Sbjct 1468 TGCGTCCATCTTCTGGCTGAAGAAGCGGGGACTCATGCCCGGCCTCACCTTCAGCAACGA 1527 Query 94917 GCTTATCTCTCGTGACGAGG 94936 ||| ||| ||| ||||||| Sbjct 1528 GCTCATCAGTCGAGACGAGG 1547 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 95161 AACTCCAAGAATCCATTTGACTTCATGGAGAACATTAGCCTCGACGGGAAGACAAACTTC 95220 ||||| |||| || || |||||||||||| ||||| | | || ||||||||||||||| Sbjct 3152 AACTCGGAGAACCCTTTCGACTTCATGGAGCACATTTCCTTGGAAGGGAAGACAAACTTC 3211 Query 95221 TTCGAAAAGAGGGTTGGGGACTA 95243 || || |||||||| ||||| || Sbjct 3212 TTTGAGAAGAGGGTCGGGGAGTA 3234 >seq53522 Length=4295 Score = 93.3 bits (102), Expect = 5e-14 Identities = 247/371 (67%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 ||||||||| | ||| ||||| || | || |||||| | |||| || || || || Sbjct 1943 ACGATCAAACCTACCGGGACGTAGTAATGCACGATCAAGAACATCAGGACGGTTTGTAGC 1884 Query 9583 GGCGATGACAACAA-TACCT-GTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGG 9640 || |||| |||| | ||| |||| || |||| || ||||| || || | |||| Sbjct 1883 TGCAATGATCACAACTCCCTCGTTTGCTT--CAAATCCGTCCATTTCGACTAACATTTGG 1826 Query 9641 TTAATAGTTTGTTCCCGTTCATCATT--CGCTG-GCATACCACCAGCACTGCGTTGCTTT 9697 || | ||||| || ||||||||||| ||| | |||||| | | || || Sbjct 1825 TTTAAGGTTTGCTCACGTTCATCATTGCCGCCGCCCATACCGATACCTCT---ATGGCGA 1769 Query 9698 CCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCA 9757 || || |||||||| ||||| || |||| || || || ||| | | |||| Sbjct 1768 CCTACCGCATCAATTTCATCGATAAAGATAATACAAGGAGCATTACGTTTACCCTGTTCA 1709 Query 9758 AAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9817 || | | || ||||| | || || ||||| |||||||| || ||||| | | | || Sbjct 1708 AACATGTTACGCACACGGCTTGCACCGACACCTACAAACATTTCAACAAAATCAGAGCCG 1649 Query 9818 GAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 || | | || || ||||||| ||||| ||||| ||| || ||||| |||||| Sbjct 1648 GATATGTTAAAAAACGGAACATTAGCCTCACCTGCAATTGCTTTAGCAAGAAGTGTCTTA 1589 Query 9878 CCCGTACCTGG 9888 || || || || Sbjct 1588 CCGGTTCCAGG 1578 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 581769722927840