Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq56668 154 4e-32 seq106697 138 3e-27 seq99573 131 5e-25 seq112114 116 1e-20 seq132376 89.7 2e-12 seq57439 89.7 2e-12 seq148077 87.8 5e-12 seq97565 87.8 5e-12 seq12500 87.8 5e-12 >seq56668 Length=3325 Score = 154 bits (170), Expect = 4e-32 Identities = 223/314 (71%), Gaps = 3/314 (1%) Strand=Plus/Plus Query 349575 TTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATT 349634 |||||||| || | ||||| ||| | || | | || ||||||||||| || || || | Sbjct 2962 TTGCTGAATCAAAACTAGGTAAAAAAATATCAAAAGCAGTTATTACTGTTCCTGCTTACT 3021 Query 349635 TTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTC 349694 |||| ||| || ||| || || ||| |||| || | |||||||| ||||| || Sbjct 3022 TTAACAATGAACAACGTGAAGCTACTAAAAATGCAGGAATTATTGCGGGATTAAAAGTAG 3081 Query 349695 TAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTG 349754 |||||| ||||| ||||| |||||||| || ||||| ||||| | |||||| | Sbjct 3082 AAAGAATTATTAACGAACCAACTGCTGCTGCCATTGCTTATGGTTTAGATAAA---CAAG 3138 Query 349755 ACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTAC 349814 | |||| | || ||| | | ||||| ||||||||||| || ||||| || ||| | | Sbjct 3139 ATAAAGATCACAAAATTTTAGTATTTGACTTAGGTGGTGGGACATTTGACGTTTCAGTTC 3198 Query 349815 TAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTG 349874 || | | | | |||| |||||||| | ||||| |||||||| | ||||||| Sbjct 3199 TAGAATTAGCGGGTGGAACATTTGAAGTATTATCAACTAGTGGTGATAACAAACTTGGTG 3258 Query 349875 GAGAAGATTTTGAT 349888 | || || |||||| Sbjct 3259 GTGATGACTTTGAT 3272 >seq106697 Length=3139 Score = 138 bits (152), Expect = 3e-27 Identities = 632/984 (64%), Gaps = 29/984 (3%) Strand=Plus/Minus Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || |||||||||| ||| || || | | ||| | | || | || ||||| | || Sbjct 1995 AAGATGAAGGAAACTGCGGAGGCCTTCCTCGGTCAGAAGGTCAGCGACGCTGTGGTCACG 1936 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCA-TTGC 349680 || || || || || || || | ||||| || || ||||| || || |||| |||| Sbjct 1935 GTGCCTGCTTACTTCAACGACTCTCAGCGACAAGCCACGAAAGACGCCGG-AGCAATTGC 1877 Query 349681 GGGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCT 349740 ||| | || || || | || || ||||| ||||| || || || |||| || || | Sbjct 1876 GGGCCTCAACGTACTTCGCATCATCAATGAGCCCACCGCAGCCGCTCTTGCGTACGGCTT 1817 Query 349741 TGATAAAA---TGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTAC 349797 || || | ||| | | || ||||| | || || || || | ||||| || || Sbjct 1816 GGACAAGAACCTGAAAGGC---GAGAAAAACGTGCTAATATTCGACCTGGGTGGAGGCAC 1760 Query 349798 TTTTGATGTATCACTACTAACACTTGAAGAGGG---AATTTTTGAAGTTAAAGCAACTGC 349854 ||| ||||| || | || || |||| || || ||| || || ||| | || || Sbjct 1759 TTTCGATGTGTCCATTCTCACTATTGACGAAGGTTCAATGTTCGAGGTTCGCTCCACAGC 1700 Query 349855 TGGTGATACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAA 349914 || || || ||||| || || ||||| || ||||| || || || | || || | Sbjct 1699 AGGAGACACGCATCTCGGGGGGGAAGACTTCGATAACCGGCTGGTGAACTACTTCGTCGA 1640 Query 349915 AGAATTTAAGCGTCAAGCTAAAAT-TGATATTGGAGATAATC-CTAGAGCAATGCGTCGC 349972 ||| || | | |||| || ||| | | | | || | | ||||| || | ||| Sbjct 1639 AGAGTTCACAAGG-AAGCACAAGCGTGACCT-GAAAACAAACACGAGAGCCATCAGACGC 1582 Query 349973 CTAAGAACTGCGTGTGAACGTGCTAAGCGTTCCTTATCATCTACTACCCAAACCTCTATT 350032 || |||||||| || |||||||| ||||| | | || | || || | || Sbjct 1581 CTTAGAACTGCCTGCGAACGTGCAAAGCGAACACTCTCGAGCAGCACAGAAGCGAGCATC 1522 Query 350033 GAAATTGATTCTCTTGCTGATGGCAAAGATTTCTTTTCATCTA--TTACACGTGCTCGGT 350090 ||||| || |||| |||||| | || |||| || | | | ||| | || ||| Sbjct 1521 GAAATCGACGCTCTCTTTGATGGAATTGACTTCTA--CAGCAAAATCACAAGAGCCAGGT 1464 Query 350091 TTGAAGAATTATGTATGGATCTTTTTAG-AGCAACAATGGATCCTGTGGAAAAAGTATTA 350149 | |||||| | |||||||| || || | |||| | |||| ||||| || |||| || Sbjct 1463 TCGAAGAAATGTGTATGGACCTATTCCGCAGCACCT-TGGAACCTGTAGAGAAAGCGCTA 1405 Query 350150 AAAGATGCAAAAATGTCCAAAAATC--AGATTGATGAAGTAGTTTTAGTTGGTGGTTCTA 350207 | || |||| | | ||| || | || |||| | || | || ||||| |||| Sbjct 1404 CAGGACTCAAAGCT--CGGAAAGTCCCAAATACATGAGATCGTGCTGGTGGGTGGATCTA 1347 Query 350208 CACGTATTCCAAAAGTTCAACAGTTACTATCTGAGTTTTTTAATGGCAAAGAACCTTCTA 350267 | || || |||| | |||| || |||| || || || ||||| || || | | | Sbjct 1346 CGCGCATCCCAAGAATTCAGAAGCTACTCAAGGACTTCTTCAATGGTAAGGACCTAGCCA 1287 Query 350268 GATCAATTAATCCAGATGAAGCTGTTGCATATGGTGCTGCTGTTCAGGCATCTATTTTAT 350327 || || ||||| |||||||||||||| || || || || |||| ||| ||||| || Sbjct 1286 TGTCCATCAATCCCGATGAAGCTGTTGCTTACGGAGCAGCGATTCAAGCAGCTATTCTAA 1227 Query 350328 CTGGAAATAAGAGTTCTAAAATTGATGATCTATTACTACTAGATGTAACTCCACTTTCGC 350387 | ||| | | ||| || || | || | || || | || || | || ||||| | Sbjct 1226 CAGGAGACACGAGCGATATTATCAAAGACGTGTTGCTCGTCGACGTTGCCCCTCTTTCAC 1167 Query 350388 TTGGATTAGAAACTTCTGGTGAAGTAATGAC--TGTTCTTATTCCTAGAAATAGTACTGT 350445 | ||| | ||||| | |||| |||||| | | || || | | || || | Sbjct 1166 TGGGAATCGAAACCGCAGGTGGTGTAATGGCGAAGATCGTAGAGC--GTAACAGCCGCAT 1109 Query 350446 ACCTACAAAAAAGTCCCAAACTTTTTCTACATTTGCAGATAATCAGCCAGCGGTAACAAT 350505 |||| || | ||| | || || | || | || || || ||||| || || || || Sbjct 1108 ACCTTGCAAGACATCCAAGACATTCACGACGTACGCGGACAACCAGCCTGCCGTCACCAT 1049 Query 350506 TCAAGTATTTGAAGGTGAACGTGC 350529 ||| || || ||||||||||| || Sbjct 1048 TCAGGTGTTCGAAGGTGAACGCGC 1025 >seq99573 Length=2860 Score = 131 bits (144), Expect = 5e-25 Identities = 309/460 (67%), Gaps = 5/460 (1%) Strand=Plus/Minus Query 349475 GACGGTGATAAACCAATTATTGAGGTTGAATATAAAGGTGA-ACAAAAACAATTTTTACC 349533 ||||||| || || | || ||||||||||||| || || || ||||| || || || Sbjct 1819 GACGGTGGAAAGCCCAAGATCCAGGTTGAATATAAGGGCGAGACGAAAACC-TTCTTCCC 1761 Query 349534 CGAAGAAATTTCATCAATGGTTTTAGTTAAAATGAAGGAAATTGCTGAAGCATATTTAGG 349593 |||||| || || || ||||| | || |||||||||||||| || || ||| | || Sbjct 1760 CGAAGAGATCTCGTCGATGGTGCTCACCAAGATGAAGGAAATTGCAGAGGCCTATCTCGG 1701 Query 349594 TGAAACAGTAACTGATGCTGTTATTACTGTACCAGCCTATTTTAATGATGCCCAGCGTTC 349653 | || || || | || || | ||||| || ||||| || || || | ||||| Sbjct 1700 CAAGACCGTCACCAACGCCGTGGTAACTGTTCCGGCCTACTTCAACGACTCGCAGCGCCA 1641 Query 349654 TGCAACAAAAGATGCTGGCAGCATTGCGGGGTTAAATGTTCTAAGAATGATTAATGAACC 349713 ||||| || || || |||| || || || | || || || | || || ||||| || Sbjct 1640 AGCAACCAAGGACGCCGGCACAATCGCTGGCCTCAACGTCCTCCGTATCATCAATGAGCC 1581 Query 349714 CACTGCTGCAGCAATTGCATATGGGCTTGATAAAATGAGTGACC-AAGaaaaaaaTATTC 349772 || || ||||| || || || || || || || | | | |||| ||| || | | Sbjct 1580 GACAGCGGCAGCCATCGCCTACGGCCTGGACAAGA-GGGGGACCGGCGAACGGAACGTGC 1522 Query 349773 TTATTTTTGATTTAGGTGGTGGTACTTTTGATGTATCACTACTAACACTTGAAGAGGGAA 349832 | || || || || || || || || || ||||| || | || || | || || |||| Sbjct 1521 TCATCTTCGACTTGGGCGGCGGAACCTTCGATGTGTCCATTCTGACCATCGAGGACGGAA 1462 Query 349833 TTTTTGAAGTTAAAGCAACTGCTGGTGATACACATCTTGGTGGAGAAGATTTTGATAATC 349892 | || || || || | || || ||||| ||||| | ||||| || || || || || | Sbjct 1461 TCTTCGAGGTCAAGTCGACGGCCGGTGACACACACTTGGGTGGCGAGGACTTCGACAACC 1402 Query 349893 GTCTCGTTTCGCATTTTGTTAAAGAATTTAAGCGTCAAGC 349932 | | || || || || |||| || ||||| ||||| Sbjct 1401 GCATGGTGAACCACTTCGTGCAAGAGTTCAAGCG-CAAGC 1363 >seq112114 Length=2115 Score = 116 bits (128), Expect = 1e-20 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 140526 AGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCT 140585 || || || || || || ||||| || || || || || || || || || || |||||| Sbjct 1735 AGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTGCGGCCATCT 1676 Query 140586 TCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCC 140645 || || || || || || ||||| ||||||||||| || || || || || || || ||| Sbjct 1675 TCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGGATCCCCTCCTTGTCC 1616 Query 140646 TGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTC 140705 ||||| || || || || || ||||||| || || || || || || || | || Sbjct 1615 TGAATCTTGGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCACCTCGAGCGTGATGGTT 1556 Query 140706 TTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || ||||| || || |||||||| Sbjct 1555 TTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 1524 Score = 114 bits (126), Expect = 4e-20 Identities = 107/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 140602 CAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTA 140661 ||||||| ||||| |||||||| |||||||| ||||| || ||||||||||| || || | Sbjct 2115 CAAAGATCAGACGCTGCTGATCGGGAGGAATACCTTCCTTGTCCTGAATTTTCGCCTTCA 2056 Query 140662 CATTATCAATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTT 140721 | || || |||| ||| || || || || ||||| | |||||| ||||| || |||| Sbjct 2055 CGTTCTCGATCGTGTCACTGGGCTCCACCTCCAGTGTGATTGTCTTGCCGGTGAGGGTTT 1996 Query 140722 TTACAAAAATCTGCAT 140737 | || || |||||||| Sbjct 1995 TGACGAAGATCTGCAT 1980 >seq132376 Length=11941 Score = 89.7 bits (98), Expect = 2e-12 Identities = 134/187 (72%), Gaps = 5/187 (3%) Strand=Plus/Plus Query 390977 TTCAAGAAGACTAGTTATGTCAGCCTGGAATCCTAGTCAACTAGGAGAAATGGCATTACC 391036 |||| |||||| || | ||||| || |||||| || | | | |||||| |||| Sbjct 747 TTCACGAAGACACATTTTATCAGCATGAAATCCTGCAGAAATTAAAAATATGGCACTACC 806 Query 391037 TCCGTGCCATATTTTAGCTCAATTTAATGTTGTAAAAGATGAAC---TTTCTTGTTCATT 391093 || || |||| |||| ||||||| | ||| | ||| || | |||||| ||| Sbjct 807 ACCATGTCATACTTTAATTCAATTTTACGTTTCTGATGATAAAAAATTATCTTGTCAATT 866 Query 391094 ATATCAGAGAAGTGGAGATGTAGGTTTAGGAGTTCCATTTAATATTGCATCTTATAGTAT 391153 |||||| | |||| |||| | |||||||||||| ||||||||||| |||||| | || Sbjct 867 ATATCAACGTAGTGCAGATATTTTTTTAGGAGTTCCTTTTAATATTGCTTCTTAT-GCAT 925 Query 391154 T-TTAAC 391159 | ||||| Sbjct 926 TATTAAC 932 >seq57439 Length=1277 Score = 89.7 bits (98), Expect = 2e-12 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||| ||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 1141 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACTGGGATCGATA 1082 Query 235950 CCCAGCATCTCCAT 235963 ||||||| |||||| Sbjct 1081 CCCAGCACCTCCAT 1068 >seq148077 Length=2733 Score = 87.8 bits (96), Expect = 5e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 235890 GGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAAAA 235949 |||| ||||| ||| ||||||| ||||||||| ||||||||||||||| |||||| | | Sbjct 2681 GGGGGTGTAGCTCAGATGGTAGAGCGCTCGCTTAGCATGCGAGAGGTACTGGGATCGATA 2622 Query 235950 CCCAGCATCTCCA 235962 ||||||| ||||| Sbjct 2621 CCCAGCACCTCCA 2609 >seq97565 Length=7166 Score = 87.8 bits (96), Expect = 5e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 235888 AGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGGGATCAA 235947 |||||| ||||| ||| | ||||| ||||||||| ||||||||||||||| |||||| | Sbjct 5957 AGGGGGGTGTAGCTCAGATTGTAGAGCGCTCGCTTAGCATGCGAGAGGTACTGGGATCGA 6016 Query 235948 AACCCAGCATCTCCAT 235963 |||||||| |||||| Sbjct 6017 TACCCAGCACCTCCAT 6032 >seq12500 Length=1777 Score = 87.8 bits (96), Expect = 5e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 235882 CAATATAGGGGGATGTAGATCAATTGGTAGATCGCTCGCTTTGCATGCGAGAGGTACCGG 235941 |||| | |||| ||||| ||| ||| ||| ||||||||| ||||||||||||||| || Sbjct 1746 CAATCCAAGGGGGTGTAGCTCAGATGGGAGAGCGCTCGCTTAGCATGCGAGAGGTACTGG 1687 Query 235942 GATCAAAACCCAGCATCTCCATA 235964 |||| | |||||||| ||||||| Sbjct 1686 GATCGATACCCAGCACCTCCATA 1664 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1511283886086348