Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq1065 118 1e-21 seq20354 93.3 5e-14 seq155366 91.5 2e-13 >seq1065 Length=2691 Score = 118 bits (130), Expect = 1e-21 Identities = 153/209 (73%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 79304 CCTCCCCATAGACATCGGGCAGGCCCGGGCACTCGTGCGGGCACATCAGGTGCCAGTCCT 79363 |||| || ||||| || ||||||| ||||||||||| |||||||| ||| ||| || Sbjct 224 CCTCTCCGTAGACCTCTTGCAGGCCGGGGCACTCGTGGGGGCACATGAGGGACCACATCT 165 Query 79364 CGTCCTTCTCAACCTTCTCCATGAAGAGGTCCGGGATCCACAGGGCCGT-GAAGAGGTCG 79422 ||||| ||| ||| | |||||| | |||||||||||| ||| |||| ||||||||| Sbjct 164 GGTCCTGCTCCACCCGCCGCATGAACAAGTCCGGGATCCAGAGG-CCGTAGAAGAGGTCC 106 Query 79423 CGGCAACGCATCTCCTCGTCGCCCTGGTTCAGACGCAGCTCGAGAAAGTCCATGATGTCG 79482 || || ||||||| | ||| ||| ||| || || ||||| | | ||| Sbjct 105 CGCGCCCGATTCTCCTCCTTGCCTGTATTCTTCTTCAGGTCCAGGAAGTCAAACACGTCC 46 Query 79483 GCGTGCCACGGCTCCAGATAGATGGCGAA 79511 || |||||||||||||| || || || || Sbjct 45 GCATGCCACGGCTCCAGGTACATCGCAAA 17 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 79080 CTCGTCCGGGCTAGAAACCTCGATGATTTCTGTGCACAAATTAGACGACTTGATGGTGCC 79139 ||||||||| || ||||| || || ||||||| || ||||||||||||| Sbjct 1088 CTCGTCCGGCGCAGTGTACTCGACGACCTCGGTGCACAGGTTGCTGCACTTGATGGTGCC 1029 Query 79140 GATGTTCTTCTGGTTGCTCTTCTCGTTACAGGCGTCCTTGTAGCACATGTACGGCGTCCC 79199 || ||||||||||||| ||| ||| ||||| |||||||| ||||||||| || || Sbjct 1028 GAGGTTCTTCTGGTTGGACTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGGTGCC 969 Query 79200 GGTCTCAACCTG 79211 ||||| | ||| Sbjct 968 CGTCTCTATCTG 957 >seq20354 Length=4240 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60345 AACCCTTTCGACTGGATGGAGACCATCTCGTTGGAAGGGAAGACCAACTTCTTTGAGAAG 60404 ||||||||||||| |||||| ||| || |||||||||||||| ||||||||||||||| Sbjct 3161 AACCCTTTCGACTTCATGGAGCACATTTCCTTGGAAGGGAAGACAAACTTCTTTGAGAAG 3220 Query 60405 CGGGTCGGGGATTA 60418 |||||||||| || Sbjct 3221 AGGGTCGGGGAGTA 3234 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/227 (71%), Gaps = 7/227 (3%) Strand=Plus/Plus Query 59890 GTCTGTTCCGTGCCATAGAGACG-TCCCCCGCAGTTAAACAAAAAGCAGAATGGGCCATG 59948 |||||||| ||| | |||||| | ||| ||| |||| |||||||| ||||| || Sbjct 1323 GTCTGTTCAACGCCGTTGAGACGATGCCCTGCA-TTAAGAGGAAAGCAGACTGGGCACTG 1381 Query 59949 CAGTGGATGAGTC-CTGGAGCATCA--TTTGCACAACGTCTCATAGCTTTTGCATGCGTG 60005 | ||||| | | ||||| || |||| | || || | || ||||| ||| Sbjct 1382 AACTGGATCGGCAACCGGAGCGCCACATTTGGCGAGCGCATCGTCGCGTTTGCGGCCGTC 1441 Query 60006 GAAGGAATCTTCTTCTCTGGCTCGTTCTGTG-CTATTTTCTGGCTCAAAAAGCGTGGCCT 60064 || || ||||||||||| || ||||| || | | || |||||||| || ||||| || || Sbjct 1442 GAGGGCATCTTCTTCTCGGGATCGTT-TGCGTCCATCTTCTGGCTGAAGAAGCGGGGACT 1500 Query 60065 CATGCCGGGCCTGAGTTTCTCCAACGAGCTGATTTCCCGGGACGAGG 60111 |||||| ||||| | ||| ||||||||| || || ||||||| Sbjct 1501 CATGCCCGGCCTCACCTTCAGCAACGAGCTCATCAGTCGAGACGAGG 1547 >seq155366 Length=2809 Score = 91.5 bits (100), Expect = 2e-13 Identities = 83/105 (79%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 79647 GTGGATTCCGATGCCCCCGGACCACTTGGAGATGTGCGCGCACTCCTTGAGCGTCTCGTA 79706 || || |||||| || |||| ||||||||||| |||| |||| ||| || || ||||| Sbjct 2601 GTTGACTCCGATTCCGCCGGCAGACTTGGAGATGAGCGCACACTGCTTCAGGGTGTCGTA 2542 Query 79707 GATGCCCTCGATCGAGTCGTCCTTCATAGCGACCAGGAAGCAGCT 79751 ||| ||||| || |||||||||||| || |||||||||||| Sbjct 2541 GATTCCCTCTATACTGTCGTCCTTCATTTGGAGCAGGAAGCAGCT 2497 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547122523775040