Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq127046 147 2e-30 seq1065 113 5e-20 seq174506 91.5 2e-13 seq20354 87.8 2e-12 >seq127046 Length=6807 Score = 147 bits (162), Expect = 2e-30 Identities = 306/453 (68%), Gaps = 6/453 (1%) Strand=Plus/Plus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || || || || ||||| || ||||| || || | ||| |||| || ||| ||| ||| Sbjct 4060 CCCGTGCCAATTCCCTCGGCCCCGTTCACGAGGACCATGGGCAGGATCGGGATGTAGAAC 4119 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCA---GCC 151992 || ||||| | || || ||| || || || |||| |||| | ||| ||| Sbjct 4120 TCGGGCTCGATCTTCTGGTTGTCGTCGTACAGGTGGTTCAGCACGGGGTCGTCCAGCGCC 4179 Query 151993 GGATCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCC 152052 || || | || | || | || || |||| |||||||||||||||| |||||| Sbjct 4180 GG--CGCA-ATGAGGCGTGCCAGCGGGCTCAGCATGGTGAAGATGTATCGGGGGCTGGCA 4236 Query 152053 GCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGG 152112 || |||||||| ||| |||||| || |||||||| || ||| || ||||||| | Sbjct 4237 GCGTCCTTGCCCCCTTGCAGCCGGGTCCCAAACTGGCCGATGGGGAGCAGCAGGTTGATG 4296 Query 152113 TTGTTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCA 152172 |||||| |||||| || | ||| || | | || ||| | || | || Sbjct 4297 TTGTTGCTGCCCACAAAGTCCTGGGCAAGGCCGATGATGGTGGACATGAGGGACATCTCG 4356 Query 152173 CCGTGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCC 152232 |||||||| ||||||| ||||| || | | ||||||| ||| |||||||| || ||| Sbjct 4357 CCGTGGTGGTACGCCGAGTGCTCGGCCACTGAGCCCGCCAGCTGGGCCACCTTGATCTCC 4416 Query 152233 GTCGTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCG 152292 | | ||| ||||| || | ||| | |||||||||||| || || | ||| Sbjct 4417 CGCTTGTCGTTGCGCTTGAAGCACGTGTACAGCACCTTGCGCTGCCCCGGCTTGAGCCCG 4476 Query 152293 TCCACCACGTGAGGAATCGAACGCTTGATGTCC 152325 ||||||| | || ||||| |||| | ||||| Sbjct 4477 TCCACCAGGGACGGGATCGAGCGCTCGTTGTCC 4509 Score = 132 bits (146), Expect = 5e-26 Identities = 210/299 (70%), Gaps = 4/299 (1%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| || | ||| ||||| |||||||| || || || || || || || Sbjct 4213 GTGAAGATGTATCGGGGGCTGGCAGCGTCCTTGCCCCCTTGCAGCCGGGTCCCAAACTGG 4272 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | || || ||||| | ||||||| ||||||||||| || || | | || Sbjct 4273 CCGATGGGGAGCAGCAGGTTGATGTTGTTGCTGCCCACAAAGTCCTGGGCAAGGCCGATG 4332 Query 117425 ATCGT--ACCTTGGAGGCTCGCCTCACCATGGTGATACGCCGTCTGCTCCGCCACGTAGC 117482 || || || | |||| | ||| || ||||| ||||||| ||||| ||||| ||| Sbjct 4333 ATGGTGGACAT--GAGGGACATCTCGCCGTGGTGGTACGCCGAGTGCTCGGCCACTGAGC 4390 Query 117483 CCGCCAGCTGAGCCACCTTCATGTCTGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCA 117542 |||||||||| |||||||| || || | | ||| ||||| ||| | || | || Sbjct 4391 CCGCCAGCTGGGCCACCTTGATCTCCCGCTTGTCGTTGCGCTTGAAGCACGTGTACAGCA 4450 Query 117543 CCTTGCGCTGACTTGGCTTCAGACCATCCGCCACGTGAGGGATCGAACGCTTGATGTCC 117601 |||||||||| | ||||| || || ||| ||| | |||||||| |||| | ||||| Sbjct 4451 CCTTGCGCTGCCCCGGCTTGAGCCCGTCCACCAGGGACGGGATCGAGCGCTCGTTGTCC 4509 Score = 82.4 bits (90), Expect = 8e-11 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 152734 AGCTCGATCAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGC 152793 |||| || |||| |||||| | ||||| | ||||| || || ||||||||||||| Sbjct 4936 AGCTTGAGCAGCGACGGCCAATTGTGGTGGATAAAGTTGATGAGCAGGCCCTTGATGTGC 4995 Query 152794 GATCCGTCAAGATCCGCGTCGGTCATGATCATCAGACGACCGTAGCGCAG 152843 || ||||| | ||| ||| |||||||||||||| || || ||||| || Sbjct 4996 GAGCCGTCCTGGTCCTGGTCTGTCATGATCATCAGGCGGCCATAGCGGAG 5045 >seq1065 Length=2691 Score = 113 bits (124), Expect = 5e-20 Identities = 155/214 (72%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 53570 TTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTCTG 53629 || || || ||||| ||||||||||| || ||| | | || || || || ||| | Sbjct 17 TTTGCGATGTACCTGGAGCCGTGGCATGCGGACGTGTTTGACTTCCTGGACCTGAAGAAG 76 Query 53630 AATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTT-TACAGCTCTGTGGATTCCGGA 53688 ||| || | || |||| || || ||||| || ||| || || ||||| ||||| Sbjct 77 AATACAGGCAAGGAGGAGAATCGGGCGCGGGACCTCTTCTACGGC-CTCTGGATCCCGGA 135 Query 53689 CCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGTG 53748 | | ||||||| ||||||| ||||| || ||||| ||| |||||||| ||||||| Sbjct 136 CTTGTTCATGCGGCGGGTGGAGCAGGACCAGATGTGGTCCCTCATGTGCCCCCACGAGTG 195 Query 53749 CCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTT 53782 ||||||||| || | |||||||| ||||| ||| Sbjct 196 CCCCGGCCTGCAAGAGGTCTACGGAGAGGAATTT 229 >seq174506 Length=1893 Score = 91.5 bits (100), Expect = 2e-13 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 153832 AATTTTGAACTGAAAACGTTAGCCAACTTGGCACCGTAACCATTGCGACCGCCCGTCACG 153891 || |||| |||||| | ||| ||||||||| ||||| || |||||||| |||||||| Sbjct 1725 AACTTTGTACTGAAGATGTTGCACAACTTGGCTCCGTAGCCGTTGCGACCTCCCGTCACC 1666 Query 153892 CGTTGTTCCTCGTCGTTGTAGTTGGAGCTGGTCAAAAGGTGCCCAAAGATGAG 153944 || ||||||||||||||||| || || | |||||||| |||||||| Sbjct 1665 TTTTTCTCCTCGTCGTTGTAGTTCGACGACGTGAGCAGGTGCCCGAAGATGAG 1613 >seq20354 Length=4240 Score = 87.8 bits (96), Expect = 2e-12 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 74463 TAATCACCGACCCGCTTTTCAAAAAAGTTGGTCTTCCCTTCCAACGAGATGTTCTCCATC 74522 || || ||||||| ||| ||||| ||||| |||||||||||||| || |||| |||||| Sbjct 3234 TACTCCCCGACCCTCTTCTCAAAGAAGTTTGTCTTCCCTTCCAAGGAAATGTGCTCCATG 3175 Query 74523 CAGTCGAAAGGGTTCT 74538 ||||||||||||||| Sbjct 3174 AAGTCGAAAGGGTTCT 3159 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545817069656800