Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq112114 185 1e-41 seq127046 183 3e-41 seq1065 111 2e-19 seq86191 104 3e-17 >seq112114 Length=2115 Score = 185 bits (204), Expect = 1e-41 Identities = 177/227 (78%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| || || |||||||| || || || ||||||||| | | Sbjct 1752 ATGCAGATCTTCGTCAAGACCCTCACTGGCAAGACGATCACGCTCGAGGTTGAGCCGAGC 1811 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | ||| | ||| | ||||| ||||| ||||||||||| || ||||| || || ||| Sbjct 1812 GACACCATCGAAAACGTCAAGGCCAAAATCCAGGACAAGGAAGGGATTCCCCCGGATCAG 1871 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || |||||||||||||| | || ||||| | ||||| || Sbjct 1872 CAGCGTCTCATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACCCTGTCGGACTACAAC 1931 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| || || ||||| ||||| || ||| ||||||| |||||||| Sbjct 1932 ATCCAGAAAGAGTCCACCCTTCACCTGGTCCTGCGTCTGCGCGGTGG 1978 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || ||||| || || || || || ||||| ||| | | Sbjct 1524 ATGCAGATCTTCGTCAAAACCCTGACCGGGAAAACCATCACGCTCGAGGTGGAGCCGAGC 1583 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| ||| ||||||| || ||||||||||||||||| || || || |||||| Sbjct 1584 GACACGATTGAAAACGTGAAGGCCAAGATTCAGGACAAGGAGGGGATCCCGCCCGACCAG 1643 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || || || ||||| ||||| |||| || ||| | | ||||| || Sbjct 1644 CAACGTCTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCACCTTGTCCGACTACAAC 1703 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| || || || ||| |||| || ||||| || Sbjct 1704 ATCCAGAAGGAGTCCACCCTCCACCTGGTCCTGCGGCTGCGCGGAGG 1750 Score = 120 bits (132), Expect = 3e-22 Identities = 108/136 (79%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || ||||||||||| || || || ||||| ||| | || Sbjct 1980 ATGCAGATCTTCGTCAAAACCCTCACCGGCAAGACAATCACACTGGAGGTGGAGCCCAGT 2039 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || ||||||| ||||||||||||||||| || |||||||| || ||| Sbjct 2040 GACACGATCGAGAACGTGAAGGCGAAAATTCAGGACAAGGAAGGTATTCCTCCCGATCAG 2099 Query 27526 CAGCGTCTAATTTTTG 27541 |||||||| || |||| Sbjct 2100 CAGCGTCTGATCTTTG 2115 >seq127046 Length=6807 Score = 183 bits (202), Expect = 3e-41 Identities = 310/444 (70%), Gaps = 4/444 (1%) Strand=Plus/Minus Query 31961 AGCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACG 32020 |||| || || || | ||| |||||| |||||||| |||||||||||| | ||| Sbjct 4501 AGCGCTCGATCCCGTCCCTGGTGGACGGGCTCAAGCCGGGGCAGCGCAAGGTGCTGTACA 4442 Query 32021 CCTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGG 32080 | ||| ||||| ||| | | || || |||||||| |||||| |||||| |||| Sbjct 4441 CGTGCTTCAAGCGCAACGACAAGCGGGAGATCAAGGTGGCCCAGCTGGCGGGCTCAGTGG 4382 Query 32081 CAGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTG 32140 | ||||| |||| || |||||||||||| ||| ||| | |||||| || ||||| Sbjct 4381 CCGAGCACTCGGCGTACCACCACGGCGAGATGTCCCTCATGTCCACCATCATCGGCCTTG 4322 Query 32141 CTCAGAACTTTGTCGGTGCAAATAACCTGAACTTACT-CGAGCCATCTGGACAGTTTGGG 32199 | ||| ||||||| || || ||| | ||| | || | ||||| || ||||||||| Sbjct 4321 CCCAGGACTTTGTGGGCAGCAACAACATCAACCTGCTGCTCCCCATC-GGCCAGTTTGGG 4263 Query 32200 ACCCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCACCCGTCTCGCA 32259 |||||||| || |||||||| ||||| ||| |||| |||||||||||| || Sbjct 4262 ACCCGGCTGCAAGGGGGCAAGGACGCTGCCAGCCCCCGATACATCTTCACCATGCTGAGC 4203 Query 32260 CCTTCGACGCGCAAGATTTTCGAC-CCGTCGGACGATGCGGTGCTCAAGTACAATTTTGA 32318 || | | ||| | || || | || |||||| | ||||| || || | || Sbjct 4202 CCGCTGGCACGCCTCA-TTGCGCCGGCGCTGGACGACCCCGTGCTGAACCACCTGTACGA 4144 Query 32319 TGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGAA 32378 ||| ||| | ||||||| | |||||||| ||| | || || ||| || | ||||| Sbjct 4143 CGACAACCAGAAGATCGAGCCCGAGTTCTACATCCCGATCCTGCCCATGGTCCTCGTGAA 4084 Query 32379 CGGTGCAGAAGGCATCGGAACGGG 32402 ||| || || || || || ||||| Sbjct 4083 CGGGGCCGAGGGAATTGGCACGGG 4060 >seq1065 Length=2691 Score = 111 bits (122), Expect = 2e-19 Identities = 127/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 80927 CCACCTCTTCAGCATCTGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTG 80986 ||||||| || | | || ||||||||| || ||||||| || |||| || | Sbjct 1092 CCACCTCGTCCGGCGCAGTGTACTCGACGACCTCGGTGCACAGGTTGCTGCACTTGATGG 1033 Query 80987 TACCCAGGTTTTTCTGGTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGG 81046 | || ||||| |||||||| |||||| |||||| || |||||||| ||||||||||| Sbjct 1032 TGCCGAGGTTCTTCTGGTTGGACTTGCTGTTGCAGGCATCCTTGTACAGCATGTACGGGG 973 Query 81047 TACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCT 81097 | || ||||| | ||| |||| |||||||||| ||| | || |||||| Sbjct 972 TGCCCGTCTCTATCTGCGACTCCAGGATGGCGTACCACAGCTGCTGCGCCT 922 >seq86191 Length=3533 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||| ||||| | || || ||||| || || | |||| || | || Sbjct 3483 ATGCAGCTCGTTGGGAAGACTTTAACAGGGAAGACCATCACCTTGGAGGCCGAACCCAGT 3424 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| |||| ||||||| || || || |||| ||||| || || || |||| | Sbjct 3423 GATACCATTGAAAATGTGAAGGCGAAGATCCAAGACAGAGAGGGCATCCCACCTGACCTG 3364 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| | || || || ||| ||||||| |||| | ||| | |||| || Sbjct 3363 CAGCGTCTGAGATTCGCCGGCAAGAAACTCGAAGATGGCCTCGACCTGTCTCACTACAAC 3304 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| | || | || | || ||||||||||| Sbjct 3303 ATCCAGAAGGAGTCCACCTTGCAGTTGGTTCTCCGGCTTCGCGGTGG 3257 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568852429977920