Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028665.1 Length=56982 Score E Sequences producing significant alignments: (Bits) Value seq539 113 2e-20 >seq539 Length=1209 Score = 113 bits (124), Expect = 2e-20 Identities = 201/287 (70%), Gaps = 11/287 (4%) Strand=Plus/Minus Query 11275 TCTGCCCGTCGGTCACCTCACGCTCGGCACCGGTCACGCCGGCC---AAGGTGACGCCGT 11331 ||| |||||||| ||||| | |||||||| || ||||| ||| |||| Sbjct 884 TCTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCATGCCGGGTCGAAAGCCCCCGCCCA 825 Query 11332 GGCCGCGGCCGCGCACTACGACAACACCGGTTCGCAGATCGCGAGTGTGCGCGCCGGCGA 11391 || || || || ||||||||||||||||| | |||| || ||||||||||| Sbjct 824 TGCTGCCGCAGCCCACTACGACAACACCGGCACCTGCTTCGCCCTCGTCCGCGCCGGCGA 765 Query 11392 GGACGCTCACGGCATATGGATCGCCGGCCGTGTTCACCCC-GGCACTGACGACATGGCTC 11450 |||| |||||||| ||| | | ||| |||| | | || ||||||||| | | | Sbjct 764 AGACGAACACGGCATCTGGGT-GTCGGGCGTGGCCGCACCTGGCACTGACAGCGAAACCC 706 Query 11451 GGCAGAC---GCTGCGCCGCTCGTCGCTGTCGGGTGACTGGCGCAAGATCGACGGCAACC 11507 |||| | ||| ||| || | | |||| || || ||||| |||||| ||||||| Sbjct 705 TGCAGGCCGGGCT-CGCGGCAC--CCTTGTCCGGGGATTGGCGGCAGATCGGCGGCAACT 649 Query 11508 TCGAACTCGTCGCTGCGCTCGCCGTGAACGTGCCCGGTTTCCCGATC 11554 | || |||||||| || ||||| |||||| || |||||||||||| Sbjct 648 TGGAGCTCGTCGCCGCCCTCGCGGTGAACACACCGGGTTTCCCGATC 602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 181778253554048