Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028682.1 Length=69030 Score E Sequences producing significant alignments: (Bits) Value seq539 132 2e-26 >seq539 Length=1209 Score = 132 bits (146), Expect = 2e-26 Identities = 225/318 (71%), Gaps = 11/318 (3%) Strand=Plus/Minus Query 8190 ATGGACCCCGACACGGGCCGGATATTCGGACACATCGCGTGCTTTGGTGCATGCCACCGG 8249 || ||| |||| |||||| || ||||||| |||| ||||| || |||||||| | Sbjct 1036 ATCGACTCCGA---GGGCCGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCATGTG 980 Query 8250 TCGGTGCAGA-ACGCGTGCGTCATGGCCCCGAAATCGCCGTCGAACTACGCGCAGTTCCA 8308 ||| || || |||||| ||| || | || | | | |||||| || ||||| Sbjct 979 G-GGTTCACCGACCAGTGCGTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCA 921 Query 8309 CACCTCGCCGCCTGTGCTGCTCGATGACGGCACCCGACTCGCCGTGGGCCGCCTGACCGT 8368 |||| | || || ||| ||||||| |||| ||| ||| |||| ||| | || ||||| Sbjct 920 CACCGCCCCACCGGTGATGCTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGT 861 Query 8369 CGGCACCGGGCATGCC--GACGAGCGGCTGCGTCCCGGCCCGGCCATGGCGCACTACGAC 8426 ||||||||||||||| | ||| | | || || | | ||| || ||||||||| Sbjct 860 GGGCACCGGGCATGCCGGGTCGAAAGCCCCCGCCCATG--CTGCCGCAGCCCACTACGAC 803 Query 8427 AACACCGGCGCGTGCTGGGCGCTGGTGCGTGCCTACG-AGACCAGCGTCGGAATCGAGGT 8485 ||||||||| | |||| || || || || ||| || |||| | | ||| ||| ||| Sbjct 802 AACACCGGCACCTGCTTCGCCCTCGTCCGCGCCGGCGAAGACGAAC-ACGGCATCTGGGT 744 Query 8486 GTCGGGCGTGGCCGCCCC 8503 ||||||||||||||| || Sbjct 743 GTCGGGCGTGGCCGCACC 726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 220220919229116