Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028690.1 Length=68472 Score E Sequences producing significant alignments: (Bits) Value seq539 125 3e-24 seq133315 93.3 2e-14 >seq539 Length=1209 Score = 125 bits (138), Expect = 3e-24 Identities = 300/441 (68%), Gaps = 21/441 (5%) Strand=Plus/Minus Query 8184 ATGGACCCCGACACGGGCCGGATATTCGGACACATCGCGTGCTTTGGTGCGTGCCACCGG 8243 || ||| |||| |||||| || ||||||| |||| ||||| || || ||||| | Sbjct 1036 ATCGACTCCGA---GGGCCGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCATGTG 980 Query 8244 TCGGTGCAGA-ACGCGTGCGTCATGGCCCCGAAATCGCCGTCGAACTACGCGCAGTTCCA 8302 ||| || || |||||| ||| || | || | | | |||||| || ||||| Sbjct 979 G-GGTTCACCGACCAGTGCGTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCA 921 Query 8303 CACCTCGCCGCCTGTGCTGCTCGATGACGGCACCCGACTCGCCGTGGGCCGCCTGACCGT 8362 |||| | || || ||| ||||||| |||| ||| ||| |||| ||| | || ||||| Sbjct 920 CACCGCCCCACCGGTGATGCTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGT 861 Query 8363 CGGCACCGGGCATGCC--GACGAGCGGCTGCGTCCCGGCCCGGCCATGGCGCACTACGAC 8420 ||||||||||||||| | ||| | | || || | | ||| || ||||||||| Sbjct 860 GGGCACCGGGCATGCCGGGTCGAAAGCCCCCGCCCATG--CTGCCGCAGCCCACTACGAC 803 Query 8421 AACACCGGCGCGTGCTGGGCGCTGGTGCGTGCCTACG-AGACCAGCGTCGGAATCGAGGT 8479 ||||||||| | |||| || || || || ||| || |||| | | ||| ||| ||| Sbjct 802 AACACCGGCACCTGCTTCGCCCTCGTCCGCGCCGGCGAAGACGAAC-ACGGCATCTGGGT 744 Query 8480 GTCGGGCGTGGCTGCCCCGTGGGCCAC---CCCCGAGCAGATCGAGATGGGCCTCGCCTC 8536 |||||||||||| || || ||| ||| | ||| | || || ||||| | Sbjct 743 GTCGGGCGTGGCCGCACC-TGG--CACTGACAGCGAAACCCTGCAGGCCGGGCTCGCGGC 687 Query 8537 GCCGCTGTCCGGCGATTGGCGGGATTTCG--GGCAGGGCCTCGACCTGATCGCCGCCTTG 8594 || ||||||| ||||||||| | ||| |||| | | || || |||||||| | Sbjct 686 ACCCTTGTCCGGGGATTGGCGGCAGATCGGCGGCA--ACTTGGAGCTCGTCGCCGCCCTC 629 Query 8595 AGCGTCAACACGCCCGGTTTC 8615 || ||||| || |||||| Sbjct 628 GCGGTGAACACACCGGGTTTC 608 >seq133315 Length=1321 Score = 93.3 bits (102), Expect = 2e-14 Identities = 304/465 (65%), Gaps = 17/465 (4%) Strand=Plus/Minus Query 14738 GCCACCAAGATCAACAGTTGCGGTATGCCCATCGCCGGGCCTCGAAACCGTCTGGTCACG 14797 ||||||||| ||||||||||||| | ||| ||| || | | ||| |||| ||| Sbjct 984 GCCACCAAGGTCAACAGTTGCGGGCTCCCCGTCGAGGGCGCCGGCAACTATCTGACCACC 925 Query 14798 AGCGGCTATGTCAGCCTCACGTTGACCCCGGTGATGCGCGACGCCACCGACCTCACGCAG 14857 ||| | || ||| || |||| ||| ||||| | ||| || |||| Sbjct 924 GACGGTTTCGTGTCGTTCAAAATGTCCCCCAACATGAAGGACGCGAACGAGATCGAGCAG 865 Query 14858 GACAACGCTGAGGGCAAGGAATGCTTCGCAGACCGCACCGCGCCCGAGCGTCGCTGGTG- 14916 || ||||| |||| ||| ||| || | ||||||||| |||||||||| |||| Sbjct 864 GAGAACGCGCAGGGACAGGTGTGCATCACCGACCGCACCCCGCCCGAGCGCAAGTGGTAC 805 Query 14917 GACCCCGGCGTTGGAGCTGTGCAACGTCAATACCGGCCTGCTGACCATGTTCACCGGGTG 14976 |||| || | ||| |||||| || || ||| ||| | |||||| ||| || ||| Sbjct 804 GACCTCGA-GCTGGCCCTGTGCGGGGTGAACTCCGAGCTGATCACCATGCTCAACGCGTG 746 Query 14977 GGAAACGCTGGTCGACGCCAA---CGATCTGCCCGTCGGTTTCCGCGACCAAAAGGAAAT 15033 | | | |||||| ||| ||| || | ||||| ||||||||||| ||| | Sbjct 745 GAAGCAGGAAGTCGACTACAAGGGCGA-CT--CGGTCGGCTTCCGCGACCAGAAGCGCGT 689 Query 15034 CGAGTCCGATTTCGGCGTAGCGCTTGAGCTGTGGTCGGCGGGCAAGATGGAAGAGGATTG 15093 ||| || || | ||| || || || || | ||| | | |||||| || || ||||| Sbjct 688 CGAATCGGACTACGGTGTGGCCCTGGAAATCTGGACCGGCGGCAAGGCCGACGACGATTG 629 Query 15094 CGACGAGATCCCGACTTCCGACGATGTCCTCACCGACACGAGC---TCGGGCCGGTCGTA 15150 | | | ||| || ||||||| | | || ||||||| || ||| ||| Sbjct 628 CCCC---ACCCCCACCGGCGACGATATTTT---CGCCACGAGCACGTCCGGCAAAAAGTA 575 Query 15151 CGGCTATTTCCTGTTCGGCGGCACCGAGTGGACGCCCGGCGACAT 15195 || || | ||| | |||||||||| |||| ||||||||| Sbjct 574 TGGGTACCTGCTGACGTGGGGCACCGAGTTCACGCTCGGCGACAT 530 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 218439769906308