Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028778.1 Length=75626 Score E Sequences producing significant alignments: (Bits) Value seq5422 141 4e-29 >seq5422 Length=1306 Score = 141 bits (156), Expect = 4e-29 Identities = 229/327 (70%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 44974 TTCCGTGGCATTGACGCGGTGATGAACGCGGTTGGCCCGGCGCTGCGCGAGCACGGCGTT 45033 ||||| ||||| ||||| ||||||| | || ||||| || ||||| ||||||| || Sbjct 875 TTCCGCGGCATCGACGCCACGATGAACACCGTCGGCCCCGCCCTGCGAAAGCACGGTGTC 816 Query 45034 ACGGTCGTCCCTCGCGCGCT-TAGCGCGGAAGCGGAGCGTTACCAGACCGCTAAGGGCGG 45092 || |||| ||| | | | || | | ||||| |||||||| ||||||||||| Sbjct 815 GTCATCATCCCCGACGCCATGTCGATCG-ACTCCGAGCGGTACCAGACGGCTAAGGGCGG 757 Query 45093 TCAGATGTGTAACCGCACCGTGGAAATGGGCTTCCGGGTGTTCGGCCCGGCTGGCGACTA 45152 |||||| ||| |||||| | ||| ||| | || | |||||||| || ||| Sbjct 756 GCAGATGAAGAACGCCACCGTCCACATGCGCTACACCGTTTACGGCCCGGAGGGTGACAG 697 Query 45153 CTTCGACGGCACGGCGTACGGCGAGGCTGCCGACTCGGGCGATAAGTCGATGACTAAGGC 45212 |||| ||| ||||||| || || || ||| | ||||| ||| || | | |||||| Sbjct 696 CTTCACCGGATGCACGTACGGGGAAGCAGCGGACGCTGGCGACAAGGCGGTCAGTAAGGC 637 Query 45213 TGAGTCCGTCGCGCTTAGGACGTTCCTGCTGCAATCGCTGATGATTCCGACTGACGATCC 45272 ||||||||||| | |||||||||||||| |||| | | ||||| | || | Sbjct 636 GCAGTCCGTCGCGTACCGCACGTTCCTGCTGCAGGGACTGACGGTGCCGACGCAGGAGCG 577 Query 45273 GGACCCGGATGCTGAGTCGCATGAGCG 45299 ||||| || || || ||||| ||||| Sbjct 576 CGACCCCGACGCGGACTCGCACGAGCG 550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 241275508715212