Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028827.1 Length=50165 Score E Sequences producing significant alignments: (Bits) Value seq144998 176 1e-39 >seq144998 Length=1356 Score = 176 bits (194), Expect = 1e-39 Identities = 300/430 (70%), Gaps = 15/430 (3%) Strand=Plus/Minus Query 38850 CGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCGGATCTCGCTCTCCCCGTTCGGGGTGA 38909 |||| ||||| || ||| || ||||||||||| ||| | ||| |||||||| Sbjct 427 CGCCGACGTTGCGGACCGCGCCCATGCCGAAGCGGATATCGGTG---CCGACCGGGGTGA 371 Query 38910 AG--GAGCTGTTCGAGACCGAC-ACGTCGGGCGGCAGGACCCGCAGGCCCATGCGCCGCG 38966 || |||| || | || |||||||| ||||| || | ||| | ||| || Sbjct 370 AGTGGAGCG---CGGAATCGTTGACGTCGGGAGGCAGCACGGTGATGCCGAGGCGACGAC 314 Query 38967 CCTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCG 39026 |||| |||||| | || | ||||| ||||| ||| || ||||||||||||| ||||| Sbjct 313 ACTCGTTGAGGTAGATCGCGAGCTTGTCCTTGTTGTCACCGACCGAGGTGAGCAGGGCCG 254 Query 39027 CCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGCCCGT 39086 ||||||| ||||||| |||||| | ||| ||| | || || | ||||| | || |||| Sbjct 253 CCATGTATTCGGCCGTGTAGTGGGCCTTGAGGAAGGCGGTCCAGTAGGACACGACGCCGT 194 Query 39087 ACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACA 39146 | || || ||||| || |||||||||||||| ||| ||| || | || | |||||||| Sbjct 193 ATGCGGCCGAGTGTGCTTTGTTGAAGGCGTAGTCGGAGAACGGCAGCAGGATGTCCCACA 134 Query 39147 CCGCCTGGATGGCGCTGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACGA 39206 || ||| ||| || || ||||| || || | ||| | |||| || Sbjct 133 GGGCTTGGGCCGCGGCCTCGGAATAGCCGCGGTCCTTCATTCCGCTGAAGAAGCCGACCT 74 Query 39207 ACTCCTTGGCCAGAACCTCGG---GCTTCTTCTTGCCCATGGCCCGACGCAGCAGGTCGG 39263 || |||| | || ||||| ||||||||||||||| || ||||| || | |||| Sbjct 73 GCTGCTTGTCGAG---CTCGGATTTCTTCTTCTTGCCCATCGCGCGACGGAGGATATCGG 17 Query 39264 CCTGGCCCAG 39273 ||||||| || Sbjct 16 CCTGGCCGAG 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160016832605784