Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028843.1 Length=75816 Score E Sequences producing significant alignments: (Bits) Value seq5422 152 2e-32 >seq5422 Length=1306 Score = 152 bits (168), Expect = 2e-32 Identities = 282/411 (69%), Gaps = 2/411 (0%) Strand=Plus/Minus Query 44714 ACTGTCTTTGAGGCGTGGAACGCGGTCATGCGCGATGTGCAGGCGATCCGTAAGGATTCC 44773 || ||| || |||| | | ||| |||||| ||| || |||| ||| ||| | | Sbjct 959 ACCGTCATTCAGGCATTCAGCGCAGTCATGGACGAGGTACAGGGCATCGCCAAGCGTGAC 900 Query 44774 TACAACTCGGGGCAGAAGTTCAACTTCCGTGGCATTGACGCGGTGATGAACGCGGTTGGC 44833 |||| | |||| |||| ||||| ||||| ||||| ||||||| | || ||| Sbjct 899 CGCAACGCCCAGCAGGGGTTCGTGTTCCGCGGCATCGACGCCACGATGAACACCGTCGGC 840 Query 44834 CCGGCGTTGCGCGAGCACGGCGTTACGGTCGTCCCCCGCGCGCTTAGCGC-CGAAGCGGA 44892 || || |||| ||||||| || || ||||| ||| | | || ||| | || Sbjct 839 CCCGCCCTGCGAAAGCACGGTGTCGTCATCATCCCCGACGC-CATGTCGATCGACTCCGA 781 Query 44893 GCGTTACCAGACTGCTAAGGGCGGTCAGATGTGTAACCGCACCGTGGAAATGGGCTTCCG 44952 ||| |||||||| ||||||||||| |||||| ||| |||||| | ||| ||| | Sbjct 780 GCGGTACCAGACGGCTAAGGGCGGGCAGATGAAGAACGCCACCGTCCACATGCGCTACAC 721 Query 44953 GGTGTTCGGCCCGGCTGGCGACTACTTCGACGGCACGGCGTACGGCGAGGCTGCCGACTC 45012 || | |||||||| || ||| |||| ||| ||||||| || || || ||| | Sbjct 720 CGTTTACGGCCCGGAGGGTGACAGCTTCACCGGATGCACGTACGGGGAAGCAGCGGACGC 661 Query 45013 GGGCGATAAGTCGATGACTAAGGCTGAGTCCGTCGCGCTTAGGACGTTCCTCCTGCAATC 45072 ||||| ||| || | | |||||| ||||||||||| | |||||||| ||||| Sbjct 660 TGGCGACAAGGCGGTCAGTAAGGCGCAGTCCGTCGCGTACCGCACGTTCCTGCTGCAGGG 601 Query 45073 GCTGATGATCCCGACTGACGATCCGGACCCGGACGCTGAGTCGCATGAGCG 45123 |||| | | ||||| | || | ||||| ||||| || ||||| ||||| Sbjct 600 ACTGACGGTGCCGACGCAGGAGCGCGACCCCGACGCGGACTCGCACGAGCG 550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 241881993251652