Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028853.1 Length=50078 Score E Sequences producing significant alignments: (Bits) Value seq134229 192 2e-44 >seq134229 Length=4524 Score = 192 bits (212), Expect = 2e-44 Identities = 546/826 (66%), Gaps = 21/826 (3%) Strand=Plus/Plus Query 38861 ATTGTTTTATGGAACCGTTCGCAGATACCATTCGTCTGGGGATGCTTCACTTTCGTTTTC 38920 || ||||||||||| || || |||||||| || || || ||| | |||| ||||| Sbjct 2228 ATAGTTTTATGGAAACGCTCACAGATACCGTTGGTTTGAGGACTATATGCTTTAGTTTTG 2287 Query 38921 GTATGCTCTATGTCATTTATCGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCA 38980 | ||| || || | | || | | ||| || | ||| | || |||||| || ||| Sbjct 2288 GAATGATCGATATTCTCAATGCCAAGATATAGTTGGTAAGCATGGTTTTCTGGTTTTCCA 2347 Query 38981 CAATATTCACTTCCTCGGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAG 39040 |||||||| | |||| ||||||||||| | | || || | | | ||| || ||||| Sbjct 2348 CAATATTCCGTACCTCTATCAGTTAATATTCTAAGCAGAGGGATATCATGGTTTGCAAAG 2407 Query 39041 TATGGTAACACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAA 39100 |||| | || |||||||| | || ||||| | ||||| ||||| ||||| Sbjct 2408 AATGGAATAACCTTATCATTTAAGTGGTCTGCAGCTGTAATAGCCGTCTTTTCGGTATAG 2467 Query 39101 AGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCC 39160 ||||| || || ||| | || ||||| | ||| ||||| ||||||||||| || Sbjct 2468 AGTTTACAAATAGCTACTCCTCAATAGGTATCGACAAAAGTTTGCTGATAAATACGGCCT 2527 Query 39161 ACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTACC 39220 | ||||| | || || |||||| ||||||||||||| ||||| ||||||||||| | Sbjct 2528 ATGCCTTTAATATTACCAACATAGTAAGTATCTTGTGAACCAAGGTAGCCAGGGTGCATA 2587 Query 39221 GTTTCAATTTCACCACAGGCAATCTCATCTTCTTTCTTACGCTCT-AAG----GCTTGTA 39275 ||||| |||||||||| || || | | | ||| | || | | ||| || || Sbjct 2588 GTTTCTATTTCACCACTAGC-TTCACGT-TGGTTTTTAACTTTTTCAAGAACAGCAAGT- 2644 Query 39276 CCTGTGTTTCACTGAGTATAATACCTTGTTCTGCAACCAGTTTTTCCAGGGCGATTAATC 39335 || | ||||| | | |||||| | | ||| || | || || || ||| | Sbjct 2645 --TGATTATCACTTAAAACAATACCATCATTTGCTACTTTAGTCTCTAGAGCTTTTAGAC 2702 Query 39336 TTTGCTTAAAATTGGCAAGATGATGACGTAACCAAATCGAACGTACACCTCCTGCTGAAA 39395 || || ||| | | | || |||||||||||| | || | || || || | |||| Sbjct 2703 GTTTTTTGAAACTTTCTAAATCATGACGTAACCACACAGATCTAACTCCGCCACCAGAAA 2762 Query 39396 CAAAGATGCCTTGTTTACGGAGTTCCTTACTCACTCTTACCTGTCCAAATGCCGGGTTAT 39455 | || || || || | ||| ||| | | | |||| |||||||| || | Sbjct 2763 TGATTATCCCACTCTTGCGTAATTCATTAGCAGCACGTTCCTGACCAAATGCTGGAAATT 2822 Query 39456 CAAGAGCAAACTTCACAACAGCTTGCTCTATTGCCTCATCAACACGATTTTTTAAGTTGG 39515 ||| ||| | || || ||||| | |||||| | |||||||| || | | | Sbjct 2823 CAACAGCTATATTAACTACAGCATCCTCTATATTTGCGGGCACACGATTCTTAATGCAAG 2882 Query 39516 GAACGCGTCTATTTTGAT-TCA-GCAATGCTT----CAACACCACCTTGCTCA-ACCGCT 39568 |||||| | || ||| | |||| | | |||||||| ||| ||| Sbjct 2883 CTTTACGTCTA--GTCATCTCATATAGAGCTTCCCCCCTCCCCACCTTGATCATGGAGCT 2940 Query 39569 TGTTGATAACGATAGAATGTATCTCGGCTCATTCCCATTACTTTGCAGGCTTGAGAAATA 39628 ||| |||||||| |||||||| | ||| |||||||||||||| ||||| || | | Sbjct 2941 CTTTG-TAACGATAAAATGTATCCCTGCTATAACCCATTACTTTGCAAGCTTGTGATACA 2999 Query 39629 TTACCCAGTTCTTCTGCTAAATTTAATAAACCG-GTCTTGTGTTTA 39673 || || | || ||| || | |||||||||||| ||||| |||| Sbjct 3000 TTCCCTAATTGTTCAGCGAGTTTTAATAAACCGATTCTTGGCTTTA 3045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159739108735680