Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028878.1 Length=76271 Score E Sequences producing significant alignments: (Bits) Value seq5422 96.9 2e-15 seq130173 82.4 4e-11 >seq5422 Length=1306 Score = 96.9 bits (106), Expect = 2e-15 Identities = 239/354 (68%), Gaps = 8/354 (2%) Strand=Plus/Minus Query 45142 CGCAACGAACAGCAGAGGTTCAACTTCCGAGGCATTGACGCGGTAATGAACGCGGTCGGC 45201 ||||||| |||||| ||||| ||||| ||||| ||||| |||||| | |||||| Sbjct 899 CGCAACGCCCAGCAGGGGTTCGTGTTCCGCGGCATCGACGCCACGATGAACACCGTCGGC 840 Query 45202 CCGGTGCTGCGTGAGCACGGCGTGATCGTTGTTCCT-ACGGG-TGTTGAGCATGAAGCGG 45259 || | ||||| ||||||| || || | | || ||| ||| || | || | | Sbjct 839 CCCGCCCTGCGAAAGCACGGTGTCGTCATCATCCCCGACGCCATGTCGATC--GACTCCG 782 Query 45260 AGCGGTACCTGTCGAAGAGTGGCGCACAGATGTGTAACCGCACTGCCGCGATGACTTACC 45319 ||||||||| | || | |||| |||||| ||| ||| | | ||| ||| Sbjct 781 AGCGGTACCAGACGGCTAAGGGCGGGCAGATGAAGAACGCCACCGTCCACATGCGCTACA 722 Query 45320 GGGTGTACGGACCGGCTGGCGACTATTTCGACGGGACTGCG-GT-CGGTGAGGCCGCAGA 45377 || ||||| |||| || ||| ||| || ||| ||| || ||| || || || || Sbjct 721 CCGTTTACGGCCCGGAGGGTGACAGCTTC-ACCGGA-TGCACGTACGGGGAAGCAGCGGA 664 Query 45378 TTCAGGCGACAAGTCGATGACTAAGGCTGAGTCGGTTGCGCTGAGGACGTTCCTGCTGCA 45437 | ||||||||| || | | |||||| |||| || ||| | |||||||||||||| Sbjct 663 CGCTGGCGACAAGGCGGTCAGTAAGGCGCAGTCCGTCGCGTACCGCACGTTCCTGCTGCA 604 Query 45438 ATCGCTGATGCTGCCGACTGACGATCCGGACCCTGACGCTAGCTCACATGAGCG 45491 |||| | ||||||| | || | ||||| ||||| ||| || ||||| Sbjct 603 GGGACTGACGGTGCCGACGCAGGAGCGCGACCCCGACGCGGACTCGCACGAGCG 550 >seq130173 Length=1924 Score = 82.4 bits (90), Expect = 4e-11 Identities = 54/60 (90%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 62879 TGTAGCTCAGCTTGGTAGAGCGCCCGCTTTGGGAGCGGGAGGTCGCAGGTTCAAATCCTG 62938 ||| ||||||||||||||||||| || ||||||| || |||||||||||||| ||||||| Sbjct 1288 TGTGGCTCAGCTTGGTAGAGCGCTCGGTTTGGGACCGAGAGGTCGCAGGTTCGAATCCTG 1347 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 243334364115232