Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028892.1 Length=49949 Score E Sequences producing significant alignments: (Bits) Value seq144998 203 1e-47 >seq144998 Length=1356 Score = 203 bits (224), Expect = 1e-47 Identities = 309/434 (71%), Gaps = 11/434 (3%) Strand=Plus/Minus Query 37757 CGCCCACGTTCTTCACGGCGGTCAGCCCGAAGCGGATCTCCCGCTCCCCGTTCGGGGTGA 37816 |||| ||||| || ||| || ||||||||||| || | | || | |||||||| Sbjct 427 CGCCGACGTTGCGGACCGCGCCCATGCCGAAGCGGATATC--GGTGCC-GACCGGGGTGA 371 Query 37817 AGGAGGAGTTCGAGACCGAC-ACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCTGCAC 37875 || |||| || | || |||||||| ||||| || | ||| | ||| | ||| Sbjct 370 AGT-GGAGCGCGGAATCGTTGACGTCGGGAGGCAGCACGGTGATGCCGAGGCGACGACAC 312 Query 37876 TCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCC 37935 ||| |||||| | || | ||||| ||||| ||| || ||||||||||||| ||||||| Sbjct 311 TCGTTGAGGTAGATCGCGAGCTTGTCCTTGTTGTCACCGACCGAGGTGAGCAGGGCCGCC 252 Query 37936 ATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTAC 37995 ||||| ||||||| |||||| | ||| ||| | || || | ||||| | || ||||| Sbjct 251 ATGTATTCGGCCGTGTAGTGGGCCTTGAGGAAGGCGGTCCAGTAGGACACGACGCCGTAT 192 Query 37996 GCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACC 38055 || || ||||| || |||||||||||||| ||| ||| || | || | |||||||| Sbjct 191 GCGGCCGAGTGTGCTTTGTTGAAGGCGTAGTCGGAGAACGGCAGCAGGATGTCCCACAGG 132 Query 38056 GCCCGGATGGCAGCCTCCGAGTAGCCTCGCTCGCTCGCCCCCTTCTGGAAGTTCACGAAC 38115 || || || ||||| || ||||| || || || || | |||| || | Sbjct 131 GCTTGGGCCGCGGCCTCGGAATAGCCGCGGTCCTTCATTCCGCTGAAGAAGCCGACCTGC 72 Query 38116 TCCTTGGCCAGCACCTCGG---GCTTCTTCTTGCCCATGGCGCGACGGAGGAGGTCGGCC 38172 | |||| | || ||||| ||||||||||||||| ||||||||||||| |||||| Sbjct 71 TGCTTGTCGAG---CTCGGATTTCTTCTTCTTGCCCATCGCGCGACGGAGGATATCGGCC 15 Query 38173 TGACCGAGGGTGTA 38186 || ||||| | ||| Sbjct 14 TGGCCGAGCGAGTA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159327311273112