Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028898.1 Length=35764 Score E Sequences producing significant alignments: (Bits) Value seq134229 183 7e-42 >seq134229 Length=4524 Score = 183 bits (202), Expect = 7e-42 Identities = 544/826 (66%), Gaps = 21/826 (3%) Strand=Plus/Plus Query 24657 ATTGTTTTATGGAACCGTTCGCAGATGCCGTTAGTCTGCGGATGTTTTACCTTGGTTTTA 24716 || ||||||||||| || || ||||| ||||| || || ||| | | | || ||||| Sbjct 2228 ATAGTTTTATGGAAACGCTCACAGATACCGTTGGTTTGAGGACTATATGCTTTAGTTTTG 2287 Query 24717 CTGTGTTCAATATCATTTATTGCTAAATAAAGCTCATAATCGTGATTTTCTACCTTGCCA 24776 || || |||| | || | | ||| || | ||| | || |||||| || ||| Sbjct 2288 GAATGATCGATATTCTCAATGCCAAGATATAGTTGGTAAGCATGGTTTTCTGGTTTTCCA 2347 Query 24777 CAATATTCACTTCCTCGGTCAGTTAATATGCGTAACATCGGTAAACCTTGGCTTTCAAAG 24836 |||||||| | |||| ||||||||||| | | || || | | | ||| || ||||| Sbjct 2348 CAATATTCCGTACCTCTATCAGTTAATATTCTAAGCAGAGGGATATCATGGTTTGCAAAG 2407 Query 24837 TATGGTAACACTTTATCATTCAGCATATCCGCAGCACTGATAGCGGTCTTCATTGTATAA 24896 |||| | || |||||||| | || ||||| | ||||| ||||| ||||| Sbjct 2408 AATGGAATAACCTTATCATTTAAGTGGTCTGCAGCTGTAATAGCCGTCTTTTCGGTATAG 2467 Query 24897 AGTTTTGCAAACGCCACTTTACTGTAAGTATCAATAAACGTTTGTTGATAAATACGACCC 24956 ||||| || || ||| | || ||||| | ||| ||||| ||||||||||| || Sbjct 2468 AGTTTACAAATAGCTACTCCTCAATAGGTATCGACAAAAGTTTGCTGATAAATACGGCCT 2527 Query 24957 ACTCCTTTGAGGTTGCCCACATAGAAAGTATCTTGTGAGCCAAGATAGCCAGGGTGTGCC 25016 | ||||| | || || |||||| ||||||||||||| ||||| ||||||||||| Sbjct 2528 ATGCCTTTAATATTACCAACATAGTAAGTATCTTGTGAACCAAGGTAGCCAGGGTGCATA 2587 Query 25017 GTTTCAATTTCACCACAGGCAATCTCATCTTCTTTCTTACGCTCT-AAG----GCTTGTA 25071 ||||| |||||||||| || || | | | ||| | || | | ||| || || Sbjct 2588 GTTTCTATTTCACCACTAGC-TTCACGT-TGGTTTTTAACTTTTTCAAGAACAGCAAGT- 2644 Query 25072 CCTGTGTTTCACTGAGTATAATACCTTGTTCTGCAACCAGTTTTTCCAGGGCGATTAATC 25131 || | ||||| | | |||||| | | ||| || | || || || ||| | Sbjct 2645 --TGATTATCACTTAAAACAATACCATCATTTGCTACTTTAGTCTCTAGAGCTTTTAGAC 2702 Query 25132 TTTGCTTAAAATTGGCAAGATGATGACGTAACCAAATCGAACGTACACCTCCTGCTGAAA 25191 || || ||| | | | || |||||||||||| | || | || || || | |||| Sbjct 2703 GTTTTTTGAAACTTTCTAAATCATGACGTAACCACACAGATCTAACTCCGCCACCAGAAA 2762 Query 25192 CAAAGATGCCTTGTTTACGGAGTTCGTTACTCACTCTTACCTGTCCAAATGCCGGGTTAT 25251 | || || || || | ||| ||| | | | |||| |||||||| || | Sbjct 2763 TGATTATCCCACTCTTGCGTAATTCATTAGCAGCACGTTCCTGACCAAATGCTGGAAATT 2822 Query 25252 CAAGAGCAAACTTCACAACAGCTTGCTCTATTGCCTCATCAACACGATTTTTTAAGTTGG 25311 ||| ||| | || || ||||| | |||||| | |||||||| || | | | Sbjct 2823 CAACAGCTATATTAACTACAGCATCCTCTATATTTGCGGGCACACGATTCTTAATGCAAG 2882 Query 25312 GAACGCGTCTATTTTGAT-TCA-GCAATGCTT----CAACACCACCTTGCTCA-ACCGCT 25364 |||||| | || ||| | |||| | | |||||||| ||| ||| Sbjct 2883 CTTTACGTCTA--GTCATCTCATATAGAGCTTCCCCCCTCCCCACCTTGATCATGGAGCT 2940 Query 25365 TGTTGATAACGATAGAATGTATCTCGGCTCATTCCCATTACTTTGCAGGCTTGAGAAATA 25424 ||| |||||||| |||||||| | ||| |||||||||||||| ||||| || | | Sbjct 2941 CTTTG-TAACGATAAAATGTATCCCTGCTATAACCCATTACTTTGCAAGCTTGTGATACA 2999 Query 25425 TTACCCAGTTCTTCTGCTAAATTTAATAAACCG-GTCTTGTGTTTA 25469 || || | || ||| || | |||||||||||| ||||| |||| Sbjct 3000 TTCCCTAATTGTTCAGCGAGTTTTAATAAACCGATTCTTGGCTTTA 3045 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 114045551532592