Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028934.1 Length=72139 Score E Sequences producing significant alignments: (Bits) Value seq70437 127 9e-25 seq539 127 9e-25 >seq70437 Length=1356 Score = 127 bits (140), Expect = 9e-25 Identities = 197/276 (71%), Gaps = 4/276 (1%) Strand=Plus/Minus Query 10610 CGACGGCCGGATGCTGGCCACCGACATCGAGTTCAGCGTGCGCACCCCGCCGCTGCCGAT 10669 |||||| || ||||| || | |||||||| ||| | | |||| | || |||||| | Sbjct 408 CGACGGGCGCATGCTCGCATCGGACATCGACGTCACCTTCCGCAGCTTCCCCCTGCCGCT 349 Query 10670 GATGTGGACCAAGCAGACCGGGTACGGCCACGAGGACGCCTTCACCGTCGGGGTCATCGA 10729 ||||||| ||||||||||| | ||| ||||| |||||| ||| ||||| |||||||| Sbjct 348 GATGTGGGTGAAGCAGACCGGCTTCGGACACGACAACGCCTACACGGTCGGCGTCATCGA 289 Query 10730 GTCGGCCCGCGTCGACGGTGACACCGTGCGCGGGTCGGGCTACTGGCTGAACACCACCGA 10789 | || || |||||||| ||| || | | || ||| || || ||| ||||| ||| Sbjct 288 AGCCGCACGTGTCGACGGCGACGCCATCCTCGCGTCCGGTTATCTGCTCAACACGGACGA 229 Query 10790 GGCCGACGAGGCGTTCAACGA-AGCCAGCCACAAGGTCAGCCGCCCCAGCGTTGACCT-G 10847 ||| ||||||| | || | | | || ||| |||| | | ||||| || || | | Sbjct 228 GGCGAACGAGGCTGCCGACCAGATCGAG-CACGGCGTCACCGGGCCCAGTGTCGATTTGG 170 Query 10848 GCGCGCACCGAGTGGATGCTGGCCGACGAGGACGGC 10883 | ||| ||||||| || ||||||||| ||||| Sbjct 169 GTGCG-GTCGAGTGGGTGACCGCCGACGAGAACGGC 135 >seq539 Length=1209 Score = 127 bits (140), Expect = 9e-25 Identities = 258/379 (68%), Gaps = 17/379 (4%) Strand=Plus/Minus Query 11081 CGTCTACAAGGCCGAGCTGTTCGCGGACCCCCAGCTGTCGGGCCCGACGCTGCCAACCAT 11140 |||| ||||| || | |||||| ||| || ||| | | ||||| | || | |||| Sbjct 1094 CGTCCACAAGACCCACATGTTCGAGGATCCTGGGCTCACCGCACCGACCCCGCTATCCAT 1035 Query 11141 GGACCCCGACACCGGCCGCATCTTCGGACACCTGGCCTGCTTCGGTGCCTGCCACCGCAG 11200 ||| |||| ||||||||| ||||||||| || |||||||| || ||||| | Sbjct 1034 CGACTCCGAG---GGCCGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCATGTGGG 978 Query 11201 CATCCAGGCCGAATGCGTGGTGGCCCCGCGCAACGGCACCGACTACGACGAGTTCCACAC 11260 || | | | ||||| ||| || | | | |||| ||||| | | |||||||| Sbjct 977 GTTCACCGACCAGTGCGTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCACAC 918 Query 11261 CAGCCCGGCGGTGCAGCTGGACAACGGCACCCGCCTGGCCGTGGGACGGCTGACCGTCGG 11320 | ||| ||||| ||| |||||||| ||| || |||| || |||| ||||| || Sbjct 917 CGCCCCACCGGTGATGCTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGTGGG 858 Query 11321 CACCGGCCACGC--GCCCGACAGCCTGCGC----GGTGGCCCAGCCCTGGCGCACTACGA 11374 |||||| || || | ||| |||| ||| | || | |||||| ||||||| Sbjct 857 CACCGGGCATGCCGGGTCGAAAGCCCCCGCCCATGCTGCCGCAGCCC------ACTACGA 804 Query 11375 CAACACCGGCACCGCCTGGGCACTGGTCCACGTCTACGAAGATGCCCATGGCAT-TGCCT 11433 ||||||||||||| || || || |||| || | |||||| | || ||||| || | Sbjct 803 CAACACCGGCACCTGCTTCGCCCTCGTCCGCGCCGGCGAAGACGAACACGGCATCTGGGT 744 Query 11434 TCAGCGGCGTGGCTGCACC 11452 | |||||||| ||||| Sbjct 743 GTCG-GGCGTGGCCGCACC 726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230144921459600