Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028936.1 Length=59052 Score E Sequences producing significant alignments: (Bits) Value seq157722 102 3e-17 >seq157722 Length=2422 Score = 102 bits (112), Expect = 3e-17 Identities = 200/290 (69%), Gaps = 12/290 (4%) Strand=Plus/Plus Query 31845 TTGCCGCGGTCGACAGGGCTGCGG-CCGGTGTTCTCTCCTCCGCACGGTGCCTTGACGAT 31903 |||| |||||| | ||| | ||| ||||||| || |||||||| ||||| || || Sbjct 242 TTGCAGCGGTCAGC-GGGATTCGGTCCGGTGTCGTCGCCTCCGCAAGGTGCTTTCACACA 300 Query 31904 GCATCCGTCGACCACGAGGTTGTCCAGGTCGAGGCCGACAGCCTGGTCGTAGGCTTCCAG 31963 ||| |||||||| ||| | || | || ||||||| | | ||| |||| ||||| Sbjct 301 GCACCCGTCGACAGTGAGATGCTCAGGATCAAGGCCGATGACGCGATCGAAGGCCTCCAG 360 Query 31964 CGCCAGGTGGTGGAGCCGCTCGAAC----ACGCCGG--CACGGATCCACTCGTCCCGGCG 32017 | | | || | |||||| | ||| || || | |||||||||| ||||||| || Sbjct 361 CACGATCTGCTCCAGCCGCGCAAACGTGAACACCTGTGCACGGATCCATTCGTCCCTACG 420 Query 32018 GGCTCGCATCGTGGTCGCCGAGCAGGTCTCATCGGCGTGCTGCTGG--TAGGTACCTCCC 32075 | |||| |||||| |||||| | || || |||||| |||| |||| || || Sbjct 421 CACCCGCAGCGTGGTTGCCGAGACGTGTTCCTCAGCGTGC--CTGGAATAGGCCCCGCCA 478 Query 32076 AGGACGAGGCGGGCCAGAAGCTTGTCAAAGACGACCCGGTCTGGGATGCG 32125 | |||||| || | | ||||||| || || ||| ||| |||| ||| Sbjct 479 AAGACGAGACGAGTGACGCGCTTGTCGAACACTCCCCCGTCCGGGACGCG 528 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 188386166325488