Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028968.1 Length=71214 Score E Sequences producing significant alignments: (Bits) Value seq70437 132 2e-26 seq133315 129 3e-25 seq539 114 6e-21 >seq70437 Length=1356 Score = 132 bits (146), Expect = 2e-26 Identities = 154/208 (74%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 10134 TCGGCATCGAGACCAGCGACGGCCGGATGCTGGCCAAGGACATCGAGTTCAGCGTGCGCA 10193 |||||| | ||| |||||| || ||||| || ||||||||| ||| | | |||| Sbjct 424 TCGGCACCTCCACCGACGACGGGCGCATGCTCGCATCGGACATCGACGTCACCTTCCGCA 365 Query 10194 CCCCGCCGCTTCCGATGATGTGGACCAAGCAGACCGGCTATGGTCACGAGGACGCCTTCA 10253 | || || ||| |||||||| ||||||||||||| || ||||| |||||| || Sbjct 364 GCTTCCCCCTGCCGCTGATGTGGGTGAAGCAGACCGGCTTCGGACACGACAACGCCTACA 305 Query 10254 CGGTGGGCGTCATCGAGAGCGCCCGCGTGGACGGCGACACCATCCGTGGGTCGGGCTACT 10313 |||| ||||||||||| ||| || || ||||||||| |||||| | ||| || || Sbjct 304 CGGTCGGCGTCATCGAAGCCGCACGTGTCGACGGCGACGCCATCCTCGCGTCCGGTTATC 245 Query 10314 GGCTCAACACCACCGAGGCCGACGAGGC 10341 ||||||||| |||||| ||||||| Sbjct 244 TGCTCAACACGGACGAGGCGAACGAGGC 217 >seq133315 Length=1321 Score = 129 bits (142), Expect = 3e-25 Identities = 235/342 (69%), Gaps = 3/342 (1%) Strand=Plus/Minus Query 16846 GCAGGACAACGCCGAGGGCAAGGAGTGCTTCACCGACCGGACGCCGCCCGAGCGCCGCTG 16905 |||||| ||||| |||| ||| |||| |||||||||| || |||||||||||| || Sbjct 868 GCAGGAGAACGCGCAGGGACAGGTGTGCATCACCGACCGCACCCCGCCCGAGCGCAAGTG 809 Query 16906 GTACACCCCGGCCCTGGAGCTGTGCAACGTGAACACCGGTCTGCTGACCATGTTCACCGG 16965 |||| || | |||| |||||| |||||| ||| ||| | |||||| ||| || Sbjct 808 GTACGACCTCGAGCTGGCCCTGTGCGGGGTGAACTCCGAGCTGATCACCATGCTCAACGC 749 Query 16966 CTGGGAGTCGGTGCTTGACGCCAACGACCTGCCCGTTGGCTACCGCGACCAGAAGGAAAT 17025 ||| || || | ||| ||| | | | || |||| ||||||||||||| | Sbjct 748 GTGGAAGCAGGAAGTCGACTACAAGGGCGACTCGGTCGGCTTCCGCGACCAGAAGCGCGT 689 Query 17026 CGAGACCGACTTCGGCATCGCGCTGGAGCTGTGGACCAGCGGCAAGTCCGACGAGGACTG 17085 ||| | |||| ||| | || ||||| | |||||| |||||||| ||||||| || || Sbjct 688 CGAATCGGACTACGGTGTGGCCCTGGAAATCTGGACCGGCGGCAAGGCCGACGACGATTG 629 Query 17086 CGCCGACGTGCCCACCACCGACGCCGTGTTCGCGGCTGCCGGGTCGGGTCGCAGCTACGG 17145 | || || |||||| ||||| | ||||| | | ||| || | || || Sbjct 628 C-CCCAC--CCCCACCGGCGACGATATTTTCGCCACGAGCACGTCCGGCAAAAAGTATGG 572 Query 17146 CTACTTCCTGTTCGGCGGCACCGAGTGGACCCCCGGCGACAT 17187 ||| | ||| | |||||||||| || | ||||||||| Sbjct 571 GTACCTGCTGACGTGGGGCACCGAGTTCACGCTCGGCGACAT 530 >seq539 Length=1209 Score = 114 bits (126), Expect = 6e-21 Identities = 342/512 (67%), Gaps = 28/512 (5%) Strand=Plus/Minus Query 10636 CATGTTCGCTGACCCGCAGCTGTCCGGCCCGACGCTGCCCACCATGGACCCCGAGACGGG 10695 |||||||| || || ||| ||| ||||| | || |||| ||| ||||| || Sbjct 1079 CATGTTCGAGGATCCTGGGCTCACCGCACCGACCCCGCTATCCATCGACTCCGAG---GG 1023 Query 10696 GCACATGTTCGGTCACCTGGCGTGCTTTGGTGCCTGCCACCGCAGCATC-CAGAGCGAGT 10754 | ||| ||| ||||| || ||||| || || ||||| | || | || | ||| Sbjct 1022 CCGCATCAGCGGACACCTCGCATGCTTCGGGGCATGCCATGTGGGGTTCACCGACC-AGT 964 Query 10755 GCGTGGTGGCCCCGCGCAGCCGCACTGGCTACAGCATGTTCCACACCAGCCCGGCCGTGC 10814 |||| ||| || | | || || |||||| | ||||||||| ||| | ||| Sbjct 963 GCGTTCAGGCACCCCACTCCCAGACCGGCTACGCCCACTTCCACACCGCCCCACCGGTGA 904 Query 10815 GCCTGGACGACGGCACCAGCCTGCCGGTGGGGCGGCTCACCGTGGGCAGTGGCCACGC-- 10872 || ||| |||| | | || || || || ||||||||||||||| || || || Sbjct 903 TGCTCGACAACGGTGACCGTCTCCCCGTCGGCAGGCTCACCGTGGGCACCGGGCATGCCG 844 Query 10873 GCCCGACCACGTGAGCGGCCAGGTAGCAGCGGCGCACTACGACACCGCCGGTACCTGCTT 10932 | ||| | | || ||| | || || || |||||||||| | |||| |||||||| Sbjct 843 GGTCGA--AAGCCCCCGCCCATGCTGCCGCAGCCCACTACGACAACACCGGCACCTGCTT 786 Query 10933 CGCGCTGGTGCGCGTGGGCGAGGACAAGCACGGCATCTGGTTCAGCGGCGTGGCCGCGCC 10992 ||| || || |||| ||||| ||| | |||||||||||| | ||||||||||| | Sbjct 785 CGCCCTCGTCCGCGCCGGCGAAGACGAACACGGCATCTGGGTGTCGGGCGTGGCCGC-AC 727 Query 10993 CTGGGCCACGCCCGAGCAGATCGAAA---TG--GGCCTGTC-CGCG---CCGCTGTCCGG 11043 |||| || | || ||| ||||| || |||| | | |||| || ||||||| Sbjct 726 CTGG--CA---CTGA-CAG--CGAAACCCTGCAGGCCGGGCTCGCGGCACCCTTGTCCGG 675 Query 11044 CGACTGGCGGGACTTCGGCCAGGGCCTGGAGCTGGTGGCGGCGCTGGCCGTCAACACGCC 11103 || |||||| | ||||| | ||||||| || || || || || || ||||| || Sbjct 674 GGATTGGCGGCAGATCGGCGGCAACTTGGAGCTCGTCGCCGCCCTCGCGGTGAACACACC 615 Query 11104 CGGCTTCGCCGTGCGTGGCCGCGAGGGCGACC 11135 || ||| ||| | |||| || | || ||| Sbjct 614 GGGTTTC-CCGATCATGGCGTCGGGTGCCACC 584 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 227192299374300