Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_028976.1 Length=50113 Score E Sequences producing significant alignments: (Bits) Value seq144998 196 2e-45 >seq144998 Length=1356 Score = 196 bits (216), Expect = 2e-45 Identities = 311/436 (71%), Gaps = 15/436 (3%) Strand=Plus/Minus Query 38190 CGCCCACGTTCTTCACGGCGGTCAGTCCGAAGCGGATCTCCCGCTCCCCGTTCGGGGTGA 38249 |||| ||||| || ||| || ||||||||||| || | | || | |||||||| Sbjct 427 CGCCGACGTTGCGGACCGCGCCCATGCCGAAGCGGATATC--GGTGCC-GACCGGGGTGA 371 Query 38250 AGGAGGAGTTCGAGACCGAC-ACGTCGGGCGGCAGGACCCGAAGGCCCATGCGCCTGCAC 38308 || |||| || | || |||||||| ||||| || | ||| | ||| | ||| Sbjct 370 AGT-GGAGCGCGGAATCGTTGACGTCGGGAGGCAGCACGGTGATGCCGAGGCGACGACAC 312 Query 38309 TCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCCGCC 38368 ||| |||||| | || | ||||| ||||| ||| || ||||||||||||| ||||||| Sbjct 311 TCGTTGAGGTAGATCGCGAGCTTGTCCTTGTTGTCACCGACCGAGGTGAGCAGGGCCGCC 252 Query 38369 ATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGTCCGTAC 38428 ||||| ||||||| |||||| | ||| ||| | || || | ||||| | || ||||| Sbjct 251 ATGTATTCGGCCGTGTAGTGGGCCTTGAGGAAGGCGGTCCAGTAGGACACGACGCCGTAT 192 Query 38429 GCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCACACC 38488 || || ||||| || |||||||||||||| ||| ||| || | || | |||||||| Sbjct 191 GCGGCCGAGTGTGCTTTGTTGAAGGCGTAGTCGGAGAACGGCAGCAGGATGTCCCACAGG 132 Query 38489 GCCCGGATGGCAGCGTCCGAGTAGCCTCGCTCGCTTGCTCCCTTCTG--GAAGTTCACGA 38546 || || || || || || ||||| || || ||| | || ||| |||| || Sbjct 131 GCTTGGGCCGCGGCCTCGGAATAGCCGCGGTC-CTTCATTCC-GCTGAAGAAGCCGACCT 74 Query 38547 ACTCCTTGGCCAGCACCTCGG---GCTTCTTCTTGCCCATGGCGCGACGGAGAAGGTCGG 38603 || |||| | || ||||| ||||||||||||||| ||||||||||| | |||| Sbjct 73 GCTGCTTGTCGAG---CTCGGATTTCTTCTTCTTGCCCATCGCGCGACGGAGGATATCGG 17 Query 38604 CCTGACCGAGGGTGTA 38619 |||| ||||| | ||| Sbjct 16 CCTGGCCGAGCGAGTA 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159850836729400