Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq142933 260 1e-64 >seq142933 Length=8804 Score = 260 bits (288), Expect = 1e-64 Identities = 459/661 (69%), Gaps = 6/661 (1%) Strand=Plus/Plus Query 48702 TTTTAATACTTGAA-TAGCCTCTTTGACTTCATTTGCATTTCCCACTTCATATCCTAATG 48760 |||||| |||| || || | |||| | ||| |||||| || | | |||||| | Sbjct 2073 TTTTAA-ACTTAAAATAACTTCTTGTAATTCTAGTGCATTACCAATTGTTCGTCCTAAAG 2131 Query 48761 GCTGATTCATATCTGTAATGACTGCAATTGTTTTTCGATTCAGATTTTTTCCAATATCAA 48820 ||| ||||||||| |||| | ||| ||||| ||| | | ||| ||||||| | Sbjct 2132 GCTTATTCATATCACTAATAATAGCATAAATTTTTTTATTAAAAGCTTTACCAATATGTA 2191 Query 48821 CCATTTCTTGTGCTAATGCTTTAG-AGTCTTCTAATGTTTTCATAAATGCTCCATTTCCT 48879 ||||| || |||||| || | | ||| | ||| | | ||| || || ||||| Sbjct 2192 CCATTAATTTTGCTAACTCTCTTGCAGT-TACTATATCCTGAACAAAGGCACCTTTTCCG 2250 Query 48880 GTTTTAACATCTAATACAATTGCATCTGCTCCCATTGCGAtttttttACTCATAATGCTA 48939 ||||| |||| || |||| ||| || |||||||| ||||||||| ||||| ||| Sbjct 2251 CATTTAATGTCTAGTAAAATTAAATCAGCGCCCATTGCTATTTTTTTAGACATAACACTA 2310 Query 48940 CTAGCAATTAATGGAATTGAATTAACTGTTCCAGTAACATCGCGTAATGCATATAATTTT 48999 |||||||||||| | ||||| ||||||||| | |||||| |||||||||||||||||| Sbjct 2311 GCAGCAATTAATGGTAATGAATCAACTGTTCCTGAAACATCACGTAATGCATATAATTTT 2370 Query 49000 TTGTCGGCAGGCACTAAAATTCCACTTTGTCCAACTAATGC-GATTTTATGTGTATTAAC 49058 || || |||||||||||| | | | |||| | || |||| | || | | ||||||| Sbjct 2371 TTATCAGCAGGCACTAAATTACTAGTTTGACTAA-TAATACTCATACCAACTTTATTAAC 2429 Query 49059 TTGATTAATAAATTGTTCTCTTGTTAATTCTACGTTAAAGCCTTGTATAGATTCTAATTT 49118 |||||||| | | | ||| ||| || ||||| | | || ||| | ||| Sbjct 2430 AACTTTAATAAAATCTGATATTGCTAAATCACATTTAAAATTTGGAATTATTTCCAGTTT 2489 Query 49119 GTCAATTGTTCCTCCTGTGTGCCCTAAACCTCTACCTGACATTTTAGCAACAGGAATACC 49178 ||||| || || || || || || ||||| || || ||||| ||||| | || Sbjct 2490 ATCAATAGTACCACCAGTAATACCCAATCCTCTTCCAGAAATTTTTGCAACCTTTAATCC 2549 Query 49179 CAAAGAAGCAACCAATGGAGCAACGATTAAACTAATTTTATCGCCGACTCCACCTGTGGA 49238 ||| |||| | | |||| ||| | ||||||| ||||||| || || ||||| || || Sbjct 2550 ACAAGCAGCAGCTATTGGACCAAATACTAAACTAGTTTTATCACCAACACCACCAGTTGA 2609 Query 49239 ATGTTTATCTACTTTTACACCTTCGATTTTTGATAGGTCAATTGTTTCACCAGAATTAAT 49298 ||||||||| | | | || |||| ||||| || || |||||||||| |||||| Sbjct 2610 ATGTTTATCAATAATAAAGCCAGTAATTTGTGATAAATCCATGGTTTCACCAGTATTAAT 2669 Query 49299 CATGGCATTAGTTAAGGCAGAGATTTCTTCTTTAGACATGCCATTGAAATAAATTGCCAT 49358 || || || || | || | ||| || |||| ||| || | ||||||| ||||| Sbjct 2670 AATAGCTTTTGTATATGCTACTAATTCATCATTAGTCATTCCCTGAAAATAAACAGCCAT 2729 Query 49359 T 49359 | Sbjct 2730 T 2730 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450870019154880