Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq132376 174 1e-38 >seq132376 Length=11941 Score = 174 bits (192), Expect = 1e-38 Identities = 215/290 (74%), Gaps = 7/290 (2%) Strand=Plus/Minus Query 126080 ATGATTGGAATAAATATGTGCATCTCCAAATGTATGAATGAATTCACCCACCTCAAGTCC 126139 |||||| ||||||||| ||||| || || || ||||| ||||| || | || | || Sbjct 1014 ATGATTACTATAAATATGAGCATCACCTAAAGTGTGAATAAATTCTCCTAACTGATAGCC 955 Query 126140 ACATTCTTTTGC-AACAAGATGTGTCAGTAAAGCATAACTTGCAATATTGAAAGGAACAC 126198 |||| || ||| |||| || ||| | ||| |||||| |||||||| |||||||| | Sbjct 954 ACATATTTGTGCTAACATTAT-TGTTAATAATGCATAAGAAGCAATATTAAAAGGAACTC 896 Query 126199 CTAAAAATATATCAGCACTTCTTTGATATAATTGACAATTTAA---TTTACCCTCTTGTA 126255 ||||||| ||||| ||||| | |||||||||||||||| ||| |||| | || | Sbjct 895 CTAAAAAAATATCTGCACTACGTTGATATAATTGACAAGATAATTTTTTATCATCAGAAA 836 Query 126256 CGTAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCCATTGAATCGATTTCAGTAGGAT 126315 |||||||||||| | || || || ||||||| |||||| | ||||| | ||||| Sbjct 835 CGTAAAATTGAATTAAAGTATGACATGGTGGTAGTGCCATATTTTTAATTTCTGCAGGAT 776 Query 126316 TCCATGCTGAAACAATGTGACGTCGAGAGTTTGGATTGGTTTT--AATTT 126363 | |||||||| | |||||| | ||| || |||||| |||| ||||| Sbjct 775 TTCATGCTGATAAAATGTGTCTTCGTGAAAAAGGATTGTTTTTTAAATTT 726 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 407579952654812