Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_030230.1 Length=372707 Score E Sequences producing significant alignments: (Bits) Value seq36529 159 8e-34 seq112114 150 4e-31 seq193143 114 3e-20 seq72416 113 1e-19 seq201740 98.7 2e-15 seq39665 84.2 5e-11 seq12093 84.2 5e-11 >seq36529 Length=19029 Score = 159 bits (176), Expect = 8e-34 Identities = 153/196 (78%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 7536 ATTGAGTGGTAATAGCCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGAT 7595 ||| | ||| ||| |||| |||| || |||||| |||| || ||||| ||| |||| || Sbjct 16622 ATTAATTGGCAATGACCAAATTTATAATGTTATTGTTACAGCCCATGCTTTTATTATAAT 16563 Query 7596 TTTCTTTTTTGTTATGCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAAT 7655 ||| ||| | ||||| || || ||||| || || || ||||||||||| |||||||||| Sbjct 16562 TTTTTTTATAGTTATACCAGTAATGATTGGTGGATTTGGAAATTGATTAATTCCTTTAAT 16503 Query 7656 GATTGGTGCTCCTGATATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTACC 7715 | ||||| || ||||| |||||||| | | || ||| |||||||||||||| |||| Sbjct 16502 ATTAGGTGCACCAGATATAGCTTTTCCTCGAATAAATAATTTAAGTTTTTGATTATTACC 16443 Query 7716 GCCTTCCTTATTTCTA 7731 ||||| |||||| || Sbjct 16442 CCCTTCTTTATTTTTA 16427 Score = 107 bits (118), Expect = 5e-18 Identities = 83/99 (84%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||||||||||||||||||||| |||||||||||||| | || ||||| ||||| || | Sbjct 16034 TTCAGGATGACCAAAAAATCAAAATAAATGTTGATATAAAATTGGATCACCTCCCCCACA 16093 Query 370732 TGGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAA 370770 ||||||||||| ||| |||||||||| ||| ||||| Sbjct 16094 AGGATCAAAAAATGAAGTGTTAAAATTTCGATCTGTTAA 16132 >seq112114 Length=2115 Score = 150 bits (166), Expect = 4e-31 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| |||||||| ||||| || || |||| ||||| |||| ||| || Sbjct 1744 CGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAAGGTG 1685 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | |||||||| |||||||| || |||||||| || ||||| ||||||||||| || || Sbjct 1684 CGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGGGATCCCC 1625 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| || ||||| |||||| ||| || ||||| | ||||| || | | Sbjct 1624 TCCTTGTCCTGAATCTTGGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCACCTCGAGC 1565 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 ||||| || || || |||| ||||| | ||| | ||||| Sbjct 1564 GTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 1524 Score = 123 bits (136), Expect = 6e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 225493 CGAAGTCTCAGGACAAGGTGGAGAGTGGATTCTTTTTGGACATTGTAATCGGCCAAAGTT 225552 || || | |||||| ||||| || ||||| ||||| |||| ||||| || | || || Sbjct 1972 CGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGACAGGGTG 1913 Query 225553 CTCCCATCTTCTAGCTGCTTCCCAGCGAAGATAAGTCGTTGTTGGTCGGGCGGAATACCT 225612 | || || || || ||||| || |||||||| || || || || || || ||||| ||| Sbjct 1912 CGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGAATCCCT 1853 Query 225613 TCCTTGTCTTGGATCTTTTGCTTCACAGCTTCGATGGTGTCTGAGGTTTCCACGTCTAAC 225672 |||||||| ||||| || ||| || |||||||||||| | || || || | | Sbjct 1852 TCCTTGTCCTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGCTCGGCTCAACCTCGAGC 1793 Query 225673 GTGATCGTCTTGCCCGTCAAAGTTTTTATGAACACTTGCAT 225713 |||||||||||||| || | || || | ||| | ||||| Sbjct 1792 GTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 1752 >seq193143 Length=6145 Score = 114 bits (126), Expect = 3e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 7551 CCAACTTTACAACGTTATTATTACGGCGCATGCCTTTGTTATGATTTTCTTTTTTGTTAT 7610 ||| || || ||||| |||| ||||| ||||| || ||||| | |||||| | |||| Sbjct 2525 CCAGCTATATAACGTGCTTATCACGGCACATGCGGTTATTATGGTATTCTTTATGATTAT 2466 Query 7611 GCCGGTTATGATAGGCGGTTTCGGAAATTGATTCGTTCCTTTAATGATTGGTGCTCCTGA 7670 ||||| | || | || || || || || | ||||| ||| | | || || ||||| || Sbjct 2465 GCCGGCTTTGTTCGGTGGCTTTGGTAACTATTTCGTACCTCTGTTAATAGGAGCTCCCGA 2406 Query 7671 TATGGCTTTTCCAAGGCTTAACAATATAAGTTTTTGATTACTA 7713 |||||| |||||| | ||||||||||| |||||||| ||||| Sbjct 2405 TATGGCATTTCCACGCCTTAACAATATCAGTTTTTGGCTACTA 2363 >seq72416 Length=3778 Score = 113 bits (124), Expect = 1e-19 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 4471 AATATTTGACCATCAGTAATAGAGATAACATTTGTAGGGATATAAGCAGAAACATCACCT 4530 || ||||||||||||||||| || |||||||| ||||| ||||| ||||||| |||||| Sbjct 2281 AAAATTTGACCATCAGTAATTGAAATAACATTAGTAGGAATATATGCAGAAATATCACCG 2222 Query 4531 GCTTGTGTTTCGACAACAGGTAAGGCTGTTAGTGATCCACCACCAAAATTTTTATTT 4587 ||||||||||| | || ||||||||| || | ||||||||| |||| |||| Sbjct 2221 GCTTGTGTTTCAATAATAGGTAAGGCAGTAATACTCCCACCACCATGTTTTTCATTT 2165 >seq201740 Length=8247 Score = 98.7 bits (108), Expect = 2e-15 Identities = 92/113 (81%), Gaps = 3/113 (3%) Strand=Plus/Minus Query 6768 TGAGAGAATGATCAGCCACATTGGGACTGAAA-ACGGCCCAAGTCTTCTAAA-AGGGCAG 6825 |||||| |||| | |||||||||||||||| | ||||||||| |||||| | ||||| Sbjct 4550 TGAGAGGATGAACGGCCACATTGGGACTGAGACACGGCCCAAA-CTTCTACGGAAGGCAG 4492 Query 6826 CAGTGGAGAATATTTGACAATGGGCGAAAGCTTGATCGAGTAATGTTACGTGA 6878 |||| | |||| ||| ||||||||||||||| |||| ||| |||| ||||| Sbjct 4491 CAGTAGGGAATTTTTCACAATGGGCGAAAGCCTGATGGAGCAATGCCGCGTGA 4439 >seq39665 Length=22783 Score = 84.2 bits (92), Expect = 5e-11 Identities = 82/103 (80%), Gaps = 2/103 (2%) Strand=Plus/Minus Query 370672 TTCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGA 370731 ||| ||||||||||| ||||| || | ||||||||| | ||||| || || || || | Sbjct 3646 TTCTGGATGACCAAAGAATCAAAAAAGATGTTGATATAATATAGGGTCACCCCCTCCAGC 3587 Query 370732 TGGATCAAA-AAAGCTAGTATTAAAATTTCTATCAGTTAAAAC 370773 | ||||| |||| | ||||||||||||||||||||||| || Sbjct 3586 TATTTCAAAGAAAGAT-GTATTAAAATTTCTATCAGTTAATAC 3545 >seq12093 Length=5178 Score = 84.2 bits (92), Expect = 5e-11 Identities = 87/113 (77%), Gaps = 2/113 (2%) Strand=Plus/Plus Query 370673 TCAGGATGACCAAAAAATCAGAATAAATGTTGATAAAGGATAGGATCGCCTCCGCCTGAT 370732 || || ||||||||||||||||| | ||||||||| | || || || ||||| |||| | Sbjct 4859 TCTGGGTGACCAAAAAATCAGAAAAGATGTTGATATAATATTGGGTCACCTCCTCCTGCT 4918 Query 370733 GGATCAAAAAAGCTAGTATTAAAATTTCTATCAGTTAAAACAGTTGGTTTATC 370785 ||||| || ||||||||||||||||| ||||| || ||| ||||| Sbjct 4919 AATTCAAAGAATGATGTATTAAAATTTCTATCTGTTAATACCATTG--TTATC 4969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1189406337454104