Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_030842.1 Length=115510 Score E Sequences producing significant alignments: (Bits) Value seq55823 89.7 4e-13 seq152019 82.4 6e-11 >seq55823 Length=3224 Score = 89.7 bits (98), Expect = 4e-13 Identities = 99/132 (75%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 27148 TCCACGTGATCCAGGTAGACGTGAGCGTCTCCCAGGGTGTGGACAAACTCTCCCGGTTCT 27207 |||||||| | || |||| ||| ||||| |||||||| || ||||| || || ||| Sbjct 1946 TCCACGTGGTTGAGATAGATGTGGGCGTCCCCCAGGGTATGTACAAAGTCCCCGGGTCGC 1887 Query 27208 AGCCCGGTGACGTGAGCCATCATGTACGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGT 27267 |||||| || | |||| ||||| || ||||| | ||||||||||||||| || || Sbjct 1886 TTCCCGGTCACCTTGGCCACCATGTGGGTCAGGAGGGCGTAGCTGGCGATGTTGAAAGGC 1827 Query 27268 ACCCCGAGCCCC 27279 || || || ||| Sbjct 1826 ACGCCCAGGCCC 1815 >seq152019 Length=5168 Score = 82.4 bits (90), Expect = 6e-11 Identities = 119/160 (74%), Gaps = 10/160 (6%) Strand=Plus/Minus Query 48535 AGGCACCCAGAGATGGGTGACAAGTTT-GCGTCCTTCACGGCGCAAAAGGGGACATGTGG 48593 |||| ||| ||||| || |||||||| || || |||||| || |||||| |||| Sbjct 2129 AGGCGCCCCGAGATCGGGGACAAGTTCAGCAGCCGCCACGGC-CAGAAGGGGGTG-GTGG 2072 Query 48594 AGCCGTCCTGACCCAG---GAGGACATGCCCTTCGACAAGGACGGGGTGGTGCCC-GACC 48649 || || | ||||| ||||||||||||||| | | | || || ||||| |||| Sbjct 2071 GGC--TCATCGCCCAGCAGGAGGACATGCCCTTCAGCGACCAGGGTGTC-TGCCCAGACC 2015 Query 48650 TCATCATCAACCCCCACGCCTTTCCCTCCAGGATGACCGT 48689 ||||||| |||||||||| || |||||| | |||||||| Sbjct 2014 TCATCATGAACCCCCACGGGTTCCCCTCCCGCATGACCGT 1975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368586188985596