Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_030917.1 Length=93577 Score E Sequences producing significant alignments: (Bits) Value seq71940 733 0.0 seq117463 361 3e-95 >seq71940 Length=2400 Score = 733 bits (812), Expect = 0.0 Identities = 726/939 (77%), Gaps = 0/939 (0%) Strand=Plus/Plus Query 78221 GCCATCAACTGGAACAAGGTCACCGACGAGGTCGACGACACCGTGTGGGATCGACTCACC 78280 ||||||||||||||| ||| ||| | |||| || || |||||||| || ||| Sbjct 407 GCCATCAACTGGAACCGCGTCGTCGATCCGATCGATGATGAGGTCTGGGATCGCCTGACC 466 Query 78281 GGCAACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGACATCCCATCCTGGGACACC 78340 |||||||||||| |||| |||||||| ||| || ||| ||||||| || |||| || Sbjct 467 GGCAACTTCTGGCTGCCGGAGAAGGTTCCGCTGAGCAATGACATCCAGTCGTGGGCGACT 526 Query 78341 CTTACGCCGGAAGAGAAGGAACTCACTATGCGTGTGTTCACCGGCCTCACCCTGCTCGAC 78400 || || || |||||| ||| || ||||| || |||||||| || |||||||||||| Sbjct 527 CTGACCGACGATGAGAAGACACTGACGATGCGCGTCTTCACCGGTCTGACCCTGCTCGAC 586 Query 78401 ACCATCCAGGGCACAGTTGGCGCCATCTCGCTCATCGCCGACGCCAACACCCCGCACGAG 78460 || ||||||||||| || || || |||||||||||| | || || ||||||||||| Sbjct 587 ACGATCCAGGGCACCGTCGGTGCGATCTCGCTCATCCCGGATGCGGTGACCCCGCACGAA 646 Query 78461 GAGGCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTACACGCCAAGTCCTACAGCTCG 78520 ||||| ||||| || |||||||||||||||||| || ||||| ||||| ||| |||| Sbjct 647 GAGGCAGTGCTGACGAACATCGCGTTCATGGAGAGCGTGCACGCGAAGTCGTACTCCTCG 706 Query 78521 ATCTTCTCAACGCTATGCTCCTCCAAGCAGATTGACGAGGCGTTCCGTTGGTCGGAGGAG 78580 |||||||| || || ||||| | ||| |||| |||||||| ||||| |||||| ||| Sbjct 707 ATCTTCTCGACCCTGTGCTCGACGAAGGAGATCGACGAGGCATTCCGCTGGTCGCGTGAG 766 Query 78581 AACGAGTACCTGCAGCGCAAGGCCCAGATCGTCCTGGACTACTACCGCGGCGACGACCCC 78640 ||| ||||||||| ||||||| | ||| |||| ||||||||| |||||||| || Sbjct 767 AACACCTACCTGCAGTCCAAGGCCGATATCATCCTCAGCTACTACCGGGGCGACGATCCG 826 Query 78641 TTGAAGCGGAAGGTGGCCAGTACGCTCCTGGAGGGCTTCCTCTTCTACTCGGGCTTCTAC 78700 | ||||| ||||| || ||||| || ||| |||||||||||||| ||||||||| Sbjct 827 CTCAAGCGCAAGGTCGCTTCGACGCTGCTCGAGTCGTTCCTCTTCTACTCCGGCTTCTAC 886 Query 78701 CTGCCGATGTACTGGTCGAGCCGCGCCAAGCTGACGAACACCGCGGACGTGATCCGGTTG 78760 ||||| |||||||||||| | |||||| |||||||||||||| ||| | ||||| || Sbjct 887 CTGCCCATGTACTGGTCGGCGCACGCCAAACTGACGAACACCGCTGACCTCATCCGTCTG 946 Query 78761 ATTATCCGAGACGAAGCAGTTCATGGGTACTACATCGGATACAAGTACCAGCGAGGCCTC 78820 || ||||| ||||| || || || || ||||||||||| |||||||| ||| ||||| Sbjct 947 ATCATCCGCGACGAGGCTGTGCACGGCTACTACATCGGCTACAAGTATCAGAAGGGCCTG 1006 Query 78821 GAGACCCAGGGGCCGGCGCGGCAGGCTGAGCTCAAGGAGTACACGTTCGATCTGCTCTCG 78880 ||| | ||| || ||| || ||||||||||| |||||| | | || |||| Sbjct 1007 GAGTCGCAGTCCGAGGAGCGCAAGCAGGAGCTCAAGGACTACACGATGAACCTCCTCTTC 1066 Query 78881 GAGCTCTACGACAACGAGTGTGACTACACCGAGCAGCTCTATGACGACGTCGGACTCACC 78940 ||||||||||| |||||| | ||||||| | | |||| || || || || || Sbjct 1067 GAGCTCTACGAGAACGAGGTCGCCTACACCCACGACATCTACGATCCGGTGGGGCTGTCC 1126 Query 78941 GAGGATGTCAAGAAGTTCCTGCGCTACAACGGCAACAAGGCGCTGATGAACCTCGGCTAC 79000 ||||| ||||| |||||| | |||||||| |||||||||||||||||||||||||||| Sbjct 1127 GAGGACTGCAAGATGTTCCTCCACTACAACGCCAACAAGGCGCTGATGAACCTCGGCTAC 1186 Query 79001 GAAGCACTGTTCCCCAAGGAAGAGACCATGGCAGACCCGGCCATCATGTCCGCGCTCTCA 79060 ||||| ||||||||||||| | || | || | ||||||||| | | || || ||| Sbjct 1187 GAAGCGATGTTCCCCAAGGAGGTCACGAAGGTGAATCCGGCCATCCTTGCGGCTCTGTCA 1246 Query 79061 CCAGGCGGCGACGAGAACCACGACTTCTTCTCCGGGTCGGGCTCGAGCTACGTCATCGGC 79120 || ||| |||| ||||||||||||||||||||||| ||||| ||| ||||||||||||| Sbjct 1247 CCCGGCAGCGATGAGAACCACGACTTCTTCTCCGGTTCGGGATCGTCCTACGTCATCGGC 1306 Query 79121 AAAGCTGAAGCCACGGCAGATGAGGACTGGGACTTCTGA 79159 || || || ||| | ||| || ||||||||||||||| Sbjct 1307 AAGGCAGAGAACACAGAAGACGACGACTGGGACTTCTGA 1345 >seq117463 Length=1413 Score = 361 bits (400), Expect = 3e-95 Identities = 653/942 (69%), Gaps = 12/942 (1%) Strand=Plus/Plus Query 78224 ATCAACTGGAACAAGGTCACCGACGAGGTCGACGACACCGTGTGGGATCGACTCACCGGC 78283 ||||| |||||| ||| ||||||| ||| | || ||| | || ||||||| Sbjct 343 ATCAATTGGAACCGCGTCGGCGACGAGAAAGACCTCGAGGTATGGAACCGGCTCACCGCG 402 Query 78284 AACTTCTGGTTGCCCGAGAAGGTACCGGTGTCCAACGACATCCCATCCTGGGACACCCTT 78343 ||||||||| | ||||||||||| || |||||||||||||||| ||||| | | || Sbjct 403 AACTTCTGGCTACCCGAGAAGGTGCCACTGTCCAACGACATCCCCGCCTGGCAGAGGCTC 462 Query 78344 ACGCCGGAAGAGAAGGAACTC--ACTATGCGTGTGTTCACCGGCCTCACCCTGCTCGACA 78401 || | |||| ||| |||||| ||||||||||| |||||||| || || |||| |||| Sbjct 463 AC-CGAGAAG-GAACGAACTCTCACTATGCGTGTCTTCACCGGGCTGACGATGCTTGACA 520 Query 78402 CCATCCAGGGCACAGTTGGCGCCATCTCGCTCATCGCCGACGCCAACACCCCGCACGAGG 78461 | | || | |||||| || | |||| | ||| || || |||| ||||| | Sbjct 521 CGGTGCAAGCCACAGTCGGGGAGATCTGTCAGATCCAGGATGCTCGCACCGAACACGAAG 580 Query 78462 AGGCGGTGCTCACCAACATCGCGTTCATGGAGTCGGTACACGCCAAGTCCTACAGCTCGA 78521 |||| || ||||||||||||||||||| ||||||| |||||| ||||||| ||| Sbjct 581 AGGCCGTCTACACCAACATCGCGTTCATGCAGTCGGTGCACGCCCGGTCCTACTCTTCGG 640 Query 78522 TCTTCTCAACGCT-ATGCTC-CTCCAAGCAGATTGACGAGGCGTTCCGTTGGTCGGAGGA 78579 | ||||| || || | | | |||| | |||| ||||| || | || ||| | | | Sbjct 641 TGTTCTCCACCCTGACGAGCACTCC--GGAGATCGACGACGCCTACCAGTGGGCCGTAAA 698 Query 78580 GAACGAGTACCTGCAGCGCAAGGCCCAGATCGTCCTGGACTACTACCGCGGCGACGACCC 78639 ||||| || |||| | | | | || ||| | ||||| |||| ||||||| Sbjct 699 CAACGACCTGCTTCAGCAGCGGTGCAAAAAGGTACTGAAACACTACTACGGCAACGACCC 758 Query 78640 CTTGAAGCGGAAGGTGGCCAGTACGCTCCTGGAGGGCTTCCTCTTCTACTCGGGCTTCTA 78699 | || |||||||| || ||| || ||| | || ||||| | || ||||| Sbjct 759 GCTCAAACGGAAGGTCTCCTCTACTCTGCTGTCCTCGCTGCTGCTCTACGCAGGGTTCTA 818 Query 78700 CCTGCCGATGTACTGGTCGAGCCGCGCCAAGCTGACGAACACCGCGGACGTGATCCGGTT 78759 |||||| || | | || | ||||| ||||| |||||||| ||| ||||||| | Sbjct 819 CCTGCCATTGCATTTCTCCGTGCACGCCACACTGACCAACACCGCAGACATGATCCGCCT 878 Query 78760 GATTATCCGAGACGAAGCAGTTCATGGGTACTACATCGGATACAAGTACCAGCGAGGCCT 78819 || | || || | || || || || |||||| ||| ||||| || ||||||||| | Sbjct 879 CATCCTGCGGGATAAGGCCGTGCACGGCTACTACTCCGGCTACAAATATCAGCGAGGCAT 938 Query 78820 CGAGACCCAGGGGCCGGCGCGGCAGGCTGAGCTCAAGGAGTACACGTTCGATCTGCTCTC 78879 ||||| |||| | | |||||| ||| | | |||| ||| | ||| ||||| Sbjct 939 CGAGAATCAGGCATCTGAACGGCAGAACGAGATGCACGAGTTCACCTACGAGCTGCTTGA 998 Query 78880 GGAGCTCTACGACAACGAGTGTGACTACACCGAGCAGCTCTATGACGACG-TCGGACTCA 78938 || |||||||| ||| | |||| | | | || || || | || | || || | Sbjct 999 AGACCTCTACGAGCTAGAGCTCGCCTACTCAGGTGAACTGTACGA-GCCGCTGGGGCTGA 1057 Query 78939 CCGAGGATGTCAAGAAGTTCCTGCGCTACAACGGCAACAAGGCGCTGATGAACCTCGGCT 78998 || || || |||| | |||||||||| |||||||| |||||||||||||||| Sbjct 1058 TGGACGACGTGGCAGTGTTCGTACGCTACAACGCGAACAAGGCACTGATGAACCTCGGCT 1117 Query 78999 ACGAAGCACTGTTCCCCAAGGAAGAGACC-ATGGCAGACCCGGCCATCATGTCCGCGCTC 79057 || |||| ||| | || ||||||| | | || | |||| ||| | |||| || Sbjct 1118 ACCCTGCACGTTTCAGCCCGGGAGAGACCGAAGTCA-ATCCGGAAATCCTCGCCGCACTG 1176 Query 79058 TCACCAGGCGGCGACGAGAACCACGACTTCTTCTCCGGGTCGGGCTCGAGCTACGTCATC 79117 ||||||| | || |||||||||||||||||||||||||| || || |||||||||| Sbjct 1177 GCACCAGGTGCTGATGAGAACCACGACTTCTTCTCCGGGTCCGGTTCCTCCTACGTCATC 1236 Query 79118 GGCAAAGCTGAAGCCACGGCAGATGAGGACTGGGACTTCTGA 79159 ||||| | |||| ||| || | ||||||||||||||| Sbjct 1237 GGCAAGGGCGAAGACACCAGCGACGCCGACTGGGACTTCTGA 1278 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 298575529313288