Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq20354 91.5 2e-13 >seq20354 Length=4240 Score = 91.5 bits (100), Expect = 2e-13 Identities = 157/224 (70%), Gaps = 7/224 (3%) Strand=Plus/Minus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 || |||| ||| || | ||||| || ||||| |||||||| ||||| || || || Sbjct 1545 TCGTCTCGACTGATGAGCTCGTTGCTGAAGGTGAGGCCGGGCATGAGTCCCCGCTTCTTC 1486 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 ||||| || || | ||| || ||||| || ||||| ||||| || ||||||||||| ||| Sbjct 1485 AGCCAGAAGATGGACGCAAACGATCCCGAGAAGAAGATGCCCTCGACGGCCGCAAACGCG 1426 Query 48285 GTAAGTCTCTCTCCGTAACTGGC-TTC--GTTGTGTATCCACCGTT--GTGCCCAATCAG 48339 | | ||| || | |||| || |||| ||||| ||| ||||||| || | Sbjct 1425 ACGATGCGCTCGCCAAATGTGGCGCTCCGGTTGCCGATCCA--GTTCAGTGCCCAGTCTG 1368 Query 48340 CCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383 | ||| |||| | || ||||| || || | || || || ||| Sbjct 1367 CTTTCCTCTTAATGCAGGGCATCGTCTCAACGGCGTTGAACAGA 1324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692892913946240