Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_031039.1 Length=251042 Score E Sequences producing significant alignments: (Bits) Value seq81761 96.9 6e-15 >seq81761 Length=17634 Score = 96.9 bits (106), Expect = 6e-15 Identities = 246/367 (67%), Gaps = 17/367 (5%) Strand=Plus/Plus Query 17402 TATAGTGATGAATCAATTGATCTTTTGGAAGGTTTAGAAGGTATCAGAACACGTTTTGAT 17461 |||| ||| ||||||| | |||| |||||| |||||| | |||| | | || Sbjct 10320 TATAATGAATCATCAATTCAAATTTTAGAAGGTCTAGAAGCAGTTAGAAAAAGACCTGGA 10379 Query 17462 ATGTATGTGGGTGGAAAAGAT--TCAGCGGCATT--TCATCTTGTAAAAGAAGTAGTGGA 17517 |||||| | ||| | ||| || | || || |||| | || |||| | || || Sbjct 10380 ATGTATATTGGTTCTACTGATAATC-GTGGTCTTCATCATTTAGTTTGAGAAATTGTTGA 10438 Query 17518 CAACTCTATTGATGAAGCGATCAATGGATATTGTACTAATATTAATATTAC-AT--ATGA 17574 || |||||||||||| | ||| | |||||||| |||| | |||| || ||| Sbjct 10439 TAATGGTATTGATGAAGCATTAGCTGGTTTTTGTACTAGTATTGTTGTTACTATTAATGT 10498 Query 17575 TGAAAAACTCAATCAAATTTCAATTGAAGATAATGGTCGTGGTCTTCCTACTGGTATTAA 17634 ||| || ||| || | ||||||| |||||||||||| |||| |||||||| | Sbjct 10499 TGATAAG-----TCAG-TTACTGTTGAAGACAATGGTCGTGGTGTTCCAACTGGTATGCA 10552 Query 17635 TAAGAAGACTAAAAAACCTACAATTGAAGTACTTTTTACTTATATGCATGCAGGTGGAAA 17694 | | |||||| ||| ||||| ||| ||| | | ||||| |||||||| Sbjct 10553 TTCTT---CAAAAAAAAGTACTCCCGAAGTTATTTATACGGTTTTACATGCTGGTGGAAA 10609 Query 17695 ATTTAATAAGGATAGCTTTAAAGTATCAGGCGGTAAGAATGGTATTGGTTTAAAAGCAGT 17754 |||| |||| ||| | |||||||||||| ||| ||||| ||||| || ||| Sbjct 10610 ATTTGATAATGATTCTTATAAAGTATCAGGTGGTTTACATGGTGTTGGTGCTTCAGTAGT 10669 Query 17755 TAATGCT 17761 |||||| Sbjct 10670 AAATGCT 10676 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 801153042998720