Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_031058.1 Length=58566 Score E Sequences producing significant alignments: (Bits) Value seq35508 95.1 5e-15 >seq35508 Length=1175 Score = 95.1 bits (104), Expect = 5e-15 Identities = 176/257 (68%), Gaps = 16/257 (6%) Strand=Plus/Plus Query 31006 CATGCACATGTGTCGCGCCTTAATGACCACACCGACGCCCTTGGCTTCCAGGTGCTCGAA 31065 |||||||| |||| |||| | ||| || | |||||| | || ||||| |||| Sbjct 631 CATGCACAGGTGTTCGGCCTCGACGACGACGATGGCGCCCTGCGGGTCGAGGTGTTCGAC 690 Query 31066 CAGTGCGTCCGCGATCTGGTCTGTGAGCCGTTCCTGCACTTGCAGGCGGCGAGCATACAT 31125 || ||||| |||||||| | || |||||||||||||| || |||| || ||||| || Sbjct 691 GAGCGCGTCGGCGATCTGCGCGGTCAGCCGTTCCTGCACCTGGGGGCGACGGGCATAGAT 750 Query 31126 GTCCGCCAGGCGGGACAGCTTGCTCAGGCCCACGATACGACCGT------TCGGAATGTA 31179 || | ||||||| ||| || ||| ||| || |||| |||| ||||| Sbjct 751 CTCGACGAGGCGGGCCAGTTTCGACAGTCCCGTGACCTTGCCGTTCCTGCTCGGGATGTA 810 Query 31180 GCTGAT-----CGTGACCGTGCCGAAGATCGGCGCGAGGTGATGCTCGCAATGTGAGTAG 31234 || ||| || |||||| |||| ||| ||||||| || ||||| ||||| Sbjct 811 GCCGATATGGGCGACACCGTG--GAAG---GGCACGAGGTGGTGTTCGCAGGTGGAGTAC 865 Query 31235 ATGGGGATGTCGCGCAC 31251 | | ||| |||||||| Sbjct 866 AGGTCGATCTCGCGCAC 882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 186834743326976