Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq144998 170 6e-38 >seq144998 Length=1356 Score = 170 bits (188), Expect = 6e-38 Identities = 301/431 (70%), Gaps = 17/431 (4%) Strand=Plus/Minus Query 38842 CGCCCACGTTCTTCACGGCGGTCAGCCCGAAGCGGATCTCCGTCTTCCCGTTCGGGGTGA 38901 |||| ||||| || ||| || ||||||||||| || || ||| |||||||| Sbjct 427 CGCCGACGTTGCGGACCGCGCCCATGCCGAAGCGGATATCGGTG---CCGACCGGGGTGA 371 Query 38902 AG--GAGCTGTTCGAGACCGAC-ACGTCGGGCGGCAGGACG-TGAAGTCCCATCCGCCGT 38957 || |||| || | || |||||||| ||||| ||| ||| | || | || || Sbjct 370 AGTGGAGCG---CGGAATCGTTGACGTCGGGAGGCAGCACGGTGATG-CCGAGGCGACGA 315 Query 38958 GCCTCGCCGAGGTACGTGGCCATCTTGTTCTTGTCGTCGCCCACCGAGGTGAGCACGGCC 39017 |||| |||||| | || | ||||| ||||| ||| || ||||||||||||| |||| Sbjct 314 CACTCGTTGAGGTAGATCGCGAGCTTGTCCTTGTTGTCACCGACCGAGGTGAGCAGGGCC 255 Query 39018 GCCATGTACTCGGCCGGGTAGTGCGTCTTCAGGTACGCCGTGCGGTAGGCGATGAGACCG 39077 |||||||| ||||||| |||||| | ||| ||| | || || | ||||| | || ||| Sbjct 254 GCCATGTATTCGGCCGTGTAGTGGGCCTTGAGGAAGGCGGTCCAGTAGGACACGACGCCG 195 Query 39078 TACGCCGCAGAGTGCGCCTTGTTGAAGGCGTACCCGGCGAAGGGTACGAGCACGTCCCAC 39137 || || || ||||| || |||||||||||||| ||| ||| || | || | ||||||| Sbjct 194 TATGCGGCCGAGTGTGCTTTGTTGAAGGCGTAGTCGGAGAACGGCAGCAGGATGTCCCAC 135 Query 39138 ACCGCCTGGATGGCACCGTCCGAGTAGCCTCGCTCGCGCGCTCCCTTCTGGAAGTTCACG 39197 | || ||| || | || || ||||| || || | ||| | |||| || Sbjct 134 AGGGCTTGGGCCGCGGCCTCGGAATAGCCGCGGTCCTTCATTCCGCTGAAGAAGCCGACC 75 Query 39198 AACTCCTTGGCCAGAACCTCGG---GCTTCTTCTTGCCCATGGCTCGGCGGAGAAGGTCG 39254 || |||| | || ||||| ||||||||||||||| || || ||||| | ||| Sbjct 74 TGCTGCTTGTCGAG---CTCGGATTTCTTCTTCTTGCCCATCGCGCGACGGAGGATATCG 18 Query 39255 GCCTGACCCAG 39265 ||||| || || Sbjct 17 GCCTGGCCGAG 7 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159751877649248