Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_032001.1 Length=327147 Score E Sequences producing significant alignments: (Bits) Value seq112114 158 3e-33 seq109750 107 4e-18 seq127046 102 2e-16 seq86191 98.7 2e-15 >seq112114 Length=2115 Score = 158 bits (174), Expect = 3e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| ||||| || || ||||| || | ||| ||||| |||||||||||||| | Sbjct 1978 CCACCGCGCAGACGCAGGACCAGGTGAAGGGTGGACTCTTTCTGGATGTTGTAGTCCGAC 1919 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || |||||||| ||||| ||||| || ||||| ||||| | ||| || || || ||| Sbjct 1918 AGGGTGCGGCCGTCCTCGAGTTGCTTGCCGGCGAAGATGAGACGCTGCTGATCCGGGGGA 1859 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || || |||||||| ||||| || || || ||| | ||||| ||||| | || || Sbjct 1858 ATCCCTTCCTTGTCCTGGATTTTGGCCTTGACGTTTTCGATGGTGTCGCTCGGCTCAACC 1799 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||||||||| || || | ||||| ||||| |||||||| Sbjct 1798 TCGAGCGTGATCGTCTTGCCAGTGAGGGTCTTGACGAAGATCTGCAT 1752 Score = 147 bits (162), Expect = 5e-30 Identities = 171/228 (75%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAG-C 282931 || || ||||| || || ||||| || | ||| || || |||||||||||||| | | Sbjct 1750 CCTCCGCGCAGCCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 1691 Query 282932 AAGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGG 282991 ||| ||||||||||| || || || || ||||| ||||||| |||||| ||||| ||| Sbjct 1690 AAG-GTGCGGCCATCTTCGAGCTGCTTGCCGGCGAAGATCAGACGTTGCTGGTCGGGCGG 1632 Query 282992 AATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGAC 283051 || ||||||||||| || ||||| || || ||| | || || ||||| | || || Sbjct 1631 GATCCCCTCCTTGTCCTGAATCTTGGCCTTCACGTTTTCAATCGTGTCGCTCGGCTCCAC 1572 Query 283052 TTCGAGAGTGATCGTCTTACCCGTCAAAGTCTTAACGAATATCTGCAT 283099 ||||| ||||| || || || |||| || || ||||| |||||||| Sbjct 1571 CTCGAGCGTGATGGTTTTCCCGGTCAGGGTTTTGACGAAGATCTGCAT 1524 >seq109750 Length=9712 Score = 107 bits (118), Expect = 4e-18 Identities = 251/373 (67%), Gaps = 8/373 (2%) Strand=Plus/Plus Query 301420 ATGCTTAAAATGGACCCCTATATCAACGTCGATCCGGGGACGATGAGCCCGACTCAACAT 301479 |||| ||| | ||||| ||||| || || || || || || ||||| || |||||| Sbjct 6294 ATGCAAAAATTTGACCCTTATATTAATGTTGACCCAGGTACTATGAGTCCTTATCAACAC 6353 Query 301480 GGAGAAGTGTTCGTGACGGATGATGGTGCTGAAACCGATCTGGATCTGGGGCACTACGAA 301539 || ||||| | || || ||||||||||||||| ||| | ||| | || || || ||| Sbjct 6354 GGTGAAGTATATGTAACTAGTGATGGTGCTGAAACTGATTTAGATTTAGGTCATTATGAA 6413 Query 301540 CGTTTCACTTCAT-TAACCCTTAAGCGTGAAAGTAATTTTACGACTGGCCAAGTTTATTT 301598 ||||| | || || || || | | || ||| |||| | || |||| || Sbjct 6414 CGTTTTA-TTGATGAAAATCTGACTAGAGATTCCAATATTACTGCCGGAAAAGTATACCA 6472 Query 301599 AAAAGTTATCGAAAATGAACGCGAAGGTAGCTATCTCGGAAAGACGGTGCAAGTTGTTCC 301658 || ||| | |||| ||||| || ||| ||| || || || || |||||||| || Sbjct 6473 AACTGTTTTAAAAAAGGAACGTGATGGTTTTTATGAAGGGAAAACTGTACAAGTTGTACC 6532 Query 301659 CCACATCACCGATGAAATCAAAAGA-AGAATTCACATTGCG-GCTGAA----AAATCAGA 301712 || | || |||||||| |||| | | | || ||| || | || || | || Sbjct 6533 TCATGTTACTGATGAAATTAAAAAACATATTTTTAATTCCGCAATTAATAGTAAGGCTGA 6592 Query 301713 TATACTTATTGGAGAAATTGGAGGAACGGTCGGAGATATCGAATCGCTTCCTTTTATAGA 301772 | | ||||| |||||||| ||||| || || ||||| ||||| | ||||||| || Sbjct 6593 TGTTATTATTACCGAAATTGGTGGAACAGTTGGTGATATTGAATCATTAGCTTTTATTGA 6652 Query 301773 AGCGATTCGTCAA 301785 ||| ||| | ||| Sbjct 6653 AGCCATTAGACAA 6665 >seq127046 Length=6807 Score = 102 bits (112), Expect = 2e-16 Identities = 191/279 (68%), Gaps = 4/279 (1%) Strand=Plus/Plus Query 273772 TCAGTTTCGTGAAAATGTACCTGGCACTCGCATGGTCCTTGCCACCTTGCAGCCTCGAAC 273831 |||| | ||||| ||||| | || || ||| ||||||||| |||||||||| | | Sbjct 4205 TCAGCATGGTGAAGATGTATCGGGGGCTGGCAGCGTCCTTGCCCCCTTGCAGCCGGGTCC 4264 Query 273832 CAAACTGACCCTCGGGCAGTAGCCAGTTTATGTTGTTGCTACCGACGTAATCCTGAGCCA 273891 ||||||| || ||| || ||| ||| ||||||||||| || || | ||||| || | Sbjct 4265 CAAACTGGCCGATGGGGAGCAGCAGGTTGATGTTGTTGCTGCCCACAAAGTCCTGGGCAA 4324 Query 273892 TATTCACGATAGTCCCCTGAAGGGATACCTCGCCGTGGTGATAGGCGCTGTGTTCGGCGA 273951 | ||| || | ||||| | |||||||||||| || || ||| ||||| | Sbjct 4325 GGCCGATGATGGTGGACATGAGGGACATCTCGCCGTGGTGGTACGCCGAGTGCTCGGCCA 4384 Query 273952 TATAACCACTGAACTGAGCAACCTTCACAT--CGCTCGTCAAGTTTCGCTTGAATGCGGA 274009 | || | ||| || ||||| | | |||| ||| ||| |||||||| | Sbjct 4385 CTGAGCCCGCCAGCTGGGCCACCTTGATCTCCCGCTTGTC--GTTGCGCTTGAAGCACGT 4442 Query 274010 ATACAACACCTTCCGCTGCGAGGGCTTGAACCCATCAAC 274048 |||| |||||| |||||| ||||||| ||| || || Sbjct 4443 GTACAGCACCTTGCGCTGCCCCGGCTTGAGCCCGTCCAC 4481 >seq86191 Length=3533 Score = 98.7 bits (108), Expect = 2e-15 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 282873 CCACCACGCAGGCGAAGTACCAGATGTAACGTGCTTTCTTTTTGGATGTTGTAGTCAGCA 282932 ||||| || || || || |||| || || ||| || || ||||||||||||| || Sbjct 3257 CCACCGCGAAGCCGGAGAACCAACTGCAAGGTGGACTCCTTCTGGATGTTGTAGTGAGAC 3316 Query 282933 AGCGTGCGGCCATCCTCTAGTTGTTTCCCGGCAAAGATCAAACGTTGTTGGTCACCCGGA 282992 || | ||||||| || |||| || ||||| || ||| ||| || ||||| || Sbjct 3317 AGGTCGAGGCCATCTTCGAGTTTCTTGCCGGCGAATCTCAGACGCTGCAGGTCAGGTGGG 3376 Query 282993 ATACCCTCCTTGTCTTGGATCTTTGCTTTTACGGTATCGATAGTGTCCGAAGCTTCGACT 283052 || ||||| ||||||||||||| || || || | || || || || | |||| | Sbjct 3377 ATGCCCTCTCTGTCTTGGATCTTCGCCTTCACATTTTCAATGGTATCACTGGGTTCGGCC 3436 Query 283053 TCGAGAGTGATCGTCTTACCCGTCAAAGTCTT 283084 || | ||||| ||||| || || |||||||| Sbjct 3437 TCCAAGGTGATGGTCTTCCCTGTTAAAGTCTT 3468 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1043996365161464