Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Ixodes_20ricinus_20[genbank_20GCA_5F000973045.2_202016-08-24] 204,516 sequences; 514,506,549 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq112114 149 2e-30 >seq112114 Length=2115 Score = 149 bits (164), Expect = 2e-30 Identities = 161/209 (77%), Gaps = 6/209 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 || || ||||| ||||| || || || ||||| ||||| |||||||||| ||| | | Sbjct 1527 CAGATCTTCGTCAAAACCCTGACCGGGAAAACCATCACGCTCGAGGTGG--AGCCGAGCG 1584 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| || || ||||| || |||||||||||||| || || ||||| || ||||||| Sbjct 1585 ACACGATTGAAAACGTGAAGGCCAAGATTCAGGACAAGGAGGGGATCCCGCCCGACCAGC 1644 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAAC 178100 |||| || ||||||||||| || |||||||||||||| | || |||| |||| || ||| Sbjct 1645 AACGTCTGATCTTCGCCGGCAAGCAGCTCGAAGATGGCCGCAC-CTTGTCCGACTACAAC 1703 Query 178101 GTCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| || || || || || || || || Sbjct 1704 ATCCAGAAGGAGTCCACCCTCCACCTGGT 1732 Score = 131 bits (144), Expect = 4e-25 Identities = 155/208 (75%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| || || ||||| || || |||||||| |||||||| || || || Sbjct 1755 CAGATCTTCGTCAAGACCCTCACTGGCAAGACGATCACGCTCGAGGTTGA--GCCGAGCG 1812 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||||||||| |||||||| || || |||||||| ||||| || || ||||| |||| Sbjct 1813 ACACCATCGAAAACGTCAAGGCCAAAATCCAGGACAAGGAAGGGATTCCCCCGGATCAGC 1872 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | || || ||||||||||| || || ||||| || || | || || | || || ||| Sbjct 1873 AGCGTCTCATCTTCGCCGGCAAGCAACTCGAGGACGGCCGCACCCTGTCGGACTACAACA 1932 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| ||||| || || || || || || Sbjct 1933 TCCAGAAAGAGTCCACCCTTCACCTGGT 1960 Score = 100 bits (110), Expect = 7e-16 Identities = 103/133 (77%), Gaps = 4/133 (3%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || ||||| ||||| ||||| || || || ||||| || |||||||| || ||| Sbjct 1983 CAGATCTTCGTCAAAACCCTCACCGGCAAGACAATCACACTGGAGGTGGA--GCCCAGTG 2040 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 |||| ||||||||||| || || ||||||||||| ||||| || ||||| || |||| Sbjct 2041 ACACGATCGAGAACGTGAAGGCGAAAATTCAGGACAAGGAAGGTATTCCTCCCGATCAGC 2100 Query 178042 AACGACTTATCTT 178054 | || || ||||| Sbjct 2101 AGCGTCTGATCTT 2113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1200576989408104